Structure-resolved free energy estimation of the 38-atom Lennard Jones cluster via population annealing
Akie Kowaguchi, Koji Hukushima

TL;DR
This paper uses Population Annealing to analyze the thermodynamic landscape of the 38-atom Lennard-Jones cluster, identifying structural basins and computing structure-resolved free energies to understand thermodynamic competition.
Contribution
It introduces an adaptive Population Annealing framework combined with structure analysis to resolve free energies of different basins in complex energy landscapes.
Findings
Converged thermodynamic observables with sufficient population size.
Identified three structural basins: FCC-like, icosahedral, and liquid-like.
Mapped thermodynamic competition and structural crossovers.
Abstract
We systematically investigate the thermodynamic landscape of the 38-atom Lennard--Jones cluster LJ using Population Annealing (PA), a method suited for systems with challenging double-funnel energy landscapes. By employing an adaptive temperature schedule, we demonstrate that thermodynamic observables, such as internal energy and heat capacity, converge robustly when the population size is sufficiently large. To gain deeper insights into the competing basins, we introduce an integrated framework that combines PA reweighting factors with structure-resolved analysis. Using quenched configurations characterized by potential energy and Steinhardt's bond-orientational order parameters, we identify three structural basins, FCC-like, icosahedral, and liquid-like, via dimensionality reduction and clustering. This framework enables the direct computation of structure-resolved free energy…
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Taxonomy
TopicsProtein Structure and Dynamics · Advanced Chemical Physics Studies · Machine Learning in Materials Science
