Thermodynamic cost-controllability tradeoff in metabolic currency coupling

TL;DR

This paper presents a minimal theoretical model revealing a fundamental tradeoff in metabolic regulation: achieving independent control of currency metabolites increases thermodynamic costs, influencing evolutionary strategies.

Contribution

It introduces a novel theoretical framework linking currency metabolite regulation with thermodynamic costs and evolutionary implications.

Findings

Increasing regulation capacity requires balanced metabolite abundances.

Higher thermodynamic cost correlates with improved controllability.

Evolution favors different metabolite balances depending on environmental complexity.

Abstract

Cellular metabolism is globally regulated by various currency metabolites such as ATP, GTP, and NAD(P)H. These metabolites cycle between charged (high-energy) and uncharged (low-energy) states to mediate energy transfer. While distinct currency metabolites are associated with different metabolic functions, their charged and uncharged forms are generally interchangeable via biochemical reactions such as ${\rm ATP{\,+\,}GDP{\,\rightleftharpoons\,}ADP{\,+\,}GTP}$ and $\rm NADP^+{\,+\,}NADH{\,\rightleftharpoons\,}NADPH{\,+\,}NAD^+ $. Thus, their energetic states are generally coupled and influence each other, which would hinder the independent regulation of different currency metabolites. Despite the extensive knowledge of the molecular biology of individual currency metabolites, it remains poorly understood how the coordination of various coupled currency metabolites shapes metabolic regulation, efficiency, and ultimately the evolution of organisms. Here, we present a minimal theoretical model of metabolic currency coupling and reveal a fundamental tradeoff relationship between metabolic controllability and thermodynamic cost: increasing the capacity to independently regulate multiple currency metabolites generally requires comparable abundances of those metabolites, which in turn incurs a higher entropy production rate. The tradeoff suggests that in complex environments, organisms evolutionarily favor an equal abundance of currency metabolites to enhance metabolic controllability at the expense of a higher thermodynamic cost; conversely, in simple environments, organisms evolve to have imbalanced amounts of them to reduce heat dissipation. These considerations also offer a hypothesis regarding evolutionary trends in nucleotide-pool balance and genomic GC content.