CHASE: LLM Agents for Dissecting Malicious PyPI Packages

TL;DR

CHASE introduces a multi-agent system utilizing LLMs and deterministic tools to reliably detect malicious PyPI packages, achieving high accuracy and efficiency suitable for real-world deployment.

Contribution

The paper presents a novel multi-agent architecture that overcomes LLM limitations for malware detection in software packages, combining semantic analysis with deterministic security tools.

Findings

Achieves 98.4% recall with 0.08% false positives

Median analysis time of 4.5 minutes per package

Effective in operational package screening environments

Abstract

Modern software package registries like PyPI have become critical infrastructure for software development, but are increasingly exploited by threat actors distributing malicious packages with sophisticated multi-stage attack chains. While Large Language Models (LLMs) offer promising capabilities for automated code analysis, their application to security-critical malware detection faces fundamental challenges, including hallucination and context confusion, which can lead to missed detections or false alarms. We present CHASE (Collaborative Hierarchical Agents for Security Exploration), a high-reliability multi-agent architecture that addresses these limitations through a Plan-and-Execute coordination model, specialized Worker Agents focused on specific analysis aspects, and integration with deterministic security tools for critical operations. Our key insight is that reliability in LLM-based security analysis emerges not from improving individual model capabilities but from architecting systems that compensate for LLM weaknesses while leveraging their semantic understanding strengths. Evaluation on a dataset of 3,000 packages (500 malicious, 2,500 benign) demonstrates that CHASE achieves 98.4% recall with only 0.08% false positive rate, while maintaining a practical median analysis time of 4.5 minutes per package, making it suitable for operational deployment in automated package screening. Furthermore, we conducted a survey with cybersecurity professionals to evaluate the generated analysis reports, identifying their key strengths and areas for improvement. This work provides a blueprint for building reliable AI-powered security tools that can scale with the growing complexity of modern software supply chains. Our project page is available at https://t0d4.github.io/CHASE-AIware25/