Don't Mind the Gaps: Implicit Neural Representations for Resolution-Agnostic Retinal OCT Analysis

TL;DR

This paper introduces two novel INR-based frameworks for resolution-agnostic, dense 3D analysis of retinal OCT images, overcoming anisotropy and resolution limitations of traditional methods.

Contribution

It presents INR-based methods for interpolation and creating a resolution-agnostic retinal atlas, enabling consistent volumetric analysis across different imaging protocols.

Findings

Improved inter-B-scan interpolation using en-face modalities.

Created a resolution-independent retinal atlas for general analysis.

Enhanced retinal shape representation with population-based training.

Abstract

Routine clinical imaging of the retina using optical coherence tomography (OCT) is performed with large slice spacing, resulting in highly anisotropic images and a sparsely scanned retina. Most learning-based methods circumvent the problems arising from the anisotropy by using 2D approaches rather than performing volumetric analyses. These approaches inherently bear the risk of generating inconsistent results for neighboring B-scans. For example, 2D retinal layer segmentations can have irregular surfaces in 3D. Furthermore, the typically used convolutional neural networks are bound to the resolution of the training data, which prevents their usage for images acquired with a different imaging protocol. Implicit neural representations (INRs) have recently emerged as a tool to store voxelized data as a continuous representation. Using coordinates as input, INRs are resolution-agnostic, which allows them to be applied to anisotropic data. In this paper, we propose two frameworks that make use of this characteristic of INRs for dense 3D analyses of retinal OCT volumes. 1) We perform inter-B-scan interpolation by incorporating additional information from en-face modalities, that help retain relevant structures between B-scans. 2) We create a resolution-agnostic retinal atlas that enables general analysis without strict requirements for the data. Both methods leverage generalizable INRs, improving retinal shape representation through population-based training and allowing predictions for unseen cases. Our resolution-independent frameworks facilitate the analysis of OCT images with large B-scan distances, opening up possibilities for the volumetric evaluation of retinal structures and pathologies.