SaddleScape V1.0: A Python Package for Constructing Solution Landscapes via High-index Saddle Dynamics
Yuyang Liu, Hua Su, Zixiang Xiao, Lei Zhang, Jin Zhao

TL;DR
SaddleScape V1.0 is a Python package that enables systematic exploration of solution landscapes in complex systems by implementing advanced saddle dynamics methods, supporting both gradient and non-gradient systems.
Contribution
It introduces a comprehensive software tool that implements High-index Saddle Dynamics and its variants, facilitating the identification of critical points and construction of solution landscapes.
Findings
Efficient identification of local minima and saddle points.
Support for both gradient and non-gradient dynamical systems.
User-friendly interface with visualization and data export features.
Abstract
We present SaddleScape V1.0, a Python software package designed for the exploration and construction of solution landscapes in complex systems. The package implements the High-index Saddle Dynamics (HiSD) framework and its variants, including the Generalized HiSD for non-gradient systems and the Accelerated HiSD. SaddleScape V1.0 enables the systematic identification of critical points, including both local minima and high-index saddle points, by dynamically updating both the state estimate and an associated subspace characterizing the saddle's local manifold. It supports both gradient systems, defined by energy functions/functionals, and general non-gradient autonomous dynamical systems. Key features include automatic differentiation for symbolic inputs, numerical approximation techniques for Hessian-vector products, diverse eigenvalue solvers, and algorithms for constructing solution…
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Taxonomy
TopicsProtein Structure and Dynamics · Model Reduction and Neural Networks · Stochastic Gradient Optimization Techniques
