MorphoCloud: Democratizing Access to High-Performance Computing for Morphological Data Analysis

TL;DR

MorphoCloud is a cloud-based platform that provides on-demand high-performance computing resources, including GPU acceleration, to facilitate complex morphological data analysis via a web browser, democratizing access for researchers and educators.

Contribution

The paper introduces MorphoCloud, a novel cloud platform that bridges the compute gap by offering accessible, research-grade, GPU-accelerated analysis environments for morphological datasets.

Findings

Enables on-demand access to high-performance computing via web browser

Supports complex 3D morphological analysis and AI-assisted segmentation

Reduces hardware barriers for institutions with limited resources

Abstract

The digitization of biological specimens has revolutionized the field of morphology, creating large collections of 3D data, and microCT in particular. This revolution was initially supported by the development of open-source software tools, specifically the development of SlicerMorph extension to the open-source image analytics platform 3D Slicer. Through SlicerMorph and 3D Slicer, biologists, morphologists and scientists in related fields have all the necessary tools to import, visualize and analyze these complex and large datasets in a single platform that is flexible and expandible, without the need of proprietary software that hinders scientific collaboration and sharing. Yet, a significant "compute gap" remains: While data and software are now open and accessible, the necessary high-end computing resources to run them are often not equally accessible in all institutions, and particularly lacking at Primarily Undergraduate Institutions (PUIs) and other educational settings. Here, we present MorphoCloud, an "IssuesOps"-based platform that leverages Github Actions and the JetStream2 cloud farm to provide on-demand, research-grade computing environments to researchers working with 3D morphological datasets. By delivering a GPU-accelerated full desktop experience via a web browser, MorphoCloud eliminates hardware barriers, enabling complex 3D analysis and AI-assisted segmentation. This paper explains the platform and its architecture, as well as use cases it is designed to support.