Automating High Energy Physics Data Analysis with LLM-Powered Agents

TL;DR

This paper demonstrates how large language model agents can automate complex high energy physics data analysis workflows, combining AI with workflow management for reproducible scientific computing.

Contribution

It introduces the first LLM-agent-driven framework for automated HEP data analysis, integrating AI with reproducible workflow management and benchmarking multiple models.

Findings

LLM agents can autonomously generate and correct analysis code.

Workflow manager ensures deterministic execution despite stochastic model outputs.

Benchmarking reveals variability and limitations across different LLM architectures.

Abstract

We present a proof-of-principle study demonstrating the use of large language model (LLM) agents to automate a representative high energy physics (HEP) analysis. Using the Higgs boson diphoton cross-section measurement as a case study with ATLAS Open Data, we design a hybrid system that combines an LLM-based supervisor-coder agent with the Snakemake workflow manager. In this architecture, the workflow manager enforces reproducibility and determinism, while the agent autonomously generates, executes, and iteratively corrects analysis code in response to user instructions. We define quantitative evaluation metrics including success rate, error distribution, costs per specific task, and average number of API calls, to assess agent performance across multi-stage workflows. To characterize variability across architectures, we benchmark a representative selection of state-of-the-art LLMs spanning the Gemini and GPT-5 series, the Claude family, and leading open-weight models. While the workflow manager ensures deterministic execution of all analysis steps, the final outputs still show stochastic variation. Although we set the temperature to zero, other sampling parameters (e.g., top-p, top-k) remained at their defaults, and some reasoning-oriented models internally adjust these settings. Consequently, the models do not produce fully deterministic results. This study establishes the first LLM-agent-driven automated data-analysis framework in HEP, enabling systematic benchmarking of model capabilities, stability, and limitations in real-world scientific computing environments. The baseline code used in this work is available at https://huggingface.co/HWresearch/LLM4HEP. This work was accepted as a poster at the Machine Learning and the Physical Sciences (ML4PS) workshop at NeurIPS 2025. The initial submission was made on August 30, 2025.