Constraining the Baryon Content of Cosmic Filaments Using Localized Fast Radio Bursts and DESI Imaging Data
Jian-Feng Mo, Weishan Zhu, Qi-Rui Yang, Yi Zheng, Long-Long Feng

TL;DR
This study uses localized fast radio bursts and DESI galaxy data to estimate the baryon content in cosmic filaments, providing evidence for excess baryons and their redshift evolution, thus addressing the missing baryon problem.
Contribution
First application of localized FRBs combined with galaxy surveys to constrain baryon content in cosmic filaments, revealing redshift-dependent baryon fractions.
Findings
Tentative 3σ evidence for excess baryons in filaments
Baryon fraction in filaments decreases with redshift
Estimated baryon overdensity consistent with simulations
Abstract
Cosmic filaments are thought to host a substantial fraction of the missing baryons at redshifts . In this study, we constraint the baryonic content of these filaments using localized Fast Radio Bursts (FRBs). Filaments are identified from the galaxy distribution in the Dark Energy Spectroscopic Instrument (DESI) imaging surveys using the DisPerSE algorithm. We find tentative evidence ( significance) for a divergence in the relationship between the dispersion measure (DM) contributed by the intergalactic medium and redshift for FRBs whose signals intersect cosmic filaments compared to those that do not, suggesting excess baryons in the filamentary structures. Assuming an isothermal -model gas profile with , this discrepancy is best explained by a central baryon overdensity of , broadly consistent with previous simulation…
| Basic information of FRBs | Derived results of intersected filaments | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| FRB | RA | DEC | redshift | Ref. | Number | |||||
| degree | degree | |||||||||
| ‘Pass’ | 190425A | 256.11 | 21.57 | 0.0715 | 127.8 | 0.0012/- | M. Bhardwaj et al. (2023) | 1 | 0.025 | 27 |
| 200906A | 53.50 | 14.08 | 0.3688 | 577.8 | -/1 | S. Bhandari et al. (2022) | 2 | 0.175,0.225 | 73 | |
| 220105A | 208.80 | 22.47 | 0.2784 | 583.0 | -/1 | A. C. Gordon et al. (2023) | 2 | 0.025,0.075 | 56 | |
| 220509G | 282.67 | 70.24 | 0.0894 | 269.5 | -/0.99 | C. J. Law et al. (2023) | 1 | 0.025 | 32 | |
| 221219A | 257.63 | 71.63 | 0.553 | 706.7 | -/0.99 | K. Sharma et al. (2024) | 3 | 0.025,0.125,0.175 | 103 | |
| 230307A | 177.78 | 71.70 | 0.2706 | 608.9 | -/0.97 | K. Sharma et al. (2024) | 2 | 0.175,0.225 | 78 | |
| 240114A | 321.92 | 4.33 | 0.1306 | 527.1 | -/0.997 | X.-L. Chen et al. (2025) | 1 | 0.075 | 35 | |
| ‘NoPass’ | 180924B | 326.10 | 40.90 | 0.3214 | 361.4 | 0.0018/0.9994 | K. E. Heintz et al. (2020) | - | ||
| 181030A | 158.58 | 73.75 | 0.0039 | 103.5 | 0.0025/- | M. Bhardwaj et al. (2021a) | ||||
| 181112A | 327.35 | 52.97 | 0.4755 | 589.3 | 0.0257/0.9274 | J. X. Prochaska et al. (2019) | ||||
| 181223C | 181.08 | 27.58 | 0.0302 | 111.6 | 0.04/- | M. Bhardwaj et al. (2023) | ||||
| 190608B | 334.02 | 7.90 | 0.1178 | 338.7 | 0.0016/1 | S. Bhandari et al. (2020) | ||||
| 191001A | 323.35 | 54.75 | 0.234 | 506.9 | 0.0031/0.9995 | K. E. Heintz et al. (2020) | ||||
| 200120E | 149.49 | 68.83 | 0.0001 | 87.8 | 0.0006/- | M. Bhardwaj et al. (2021b) | ||||
| 200223B | 8.27 | 28.83 | 0.06024 | 203.8 | 0.01/0.899 | A. L. Ibik et al. (2023) | ||||
| 200430A | 229.71 | 12.38 | 0.16 | 380.1 | 0.0051/1.0 | K. E. Heintz et al. (2020) | ||||
| 210117A | 339.98 | 16.15 | 0.214 | 730.0 | -/0.9984 | S. Bhandari et al. (2023) | ||||
| 211212A | 157.35 | 1.36 | 0.0707 | 206.0 | -/0.998 | C. W. James et al. (2022) | ||||
| 220204A | 274.22 | 69.72 | 0.4012 | 612.584 | -/0.99 | K. Sharma et al. (2024) | ||||
| 220310F | 134.72 | 73.49 | 0.47796 | 462.24 | -/0.99 | C. J. Law et al. (2023) | ||||
| 220418A | 219.10 | 70.10 | 0.622 | 623.25 | -/0.97 | C. J. Law et al. (2023) | ||||
| 220914A | 282.06 | 73.34 | 0.1139 | 631.28 | -/0.97 | C. J. Law et al. (2023) | ||||
| 220920A | 240.26 | 70.92 | 0.15824 | 314.99 | -/0.98 | C. J. Law et al. (2023) | ||||
| 221012A | 280.80 | 70.52 | 0.28467 | 441.08 | -/1.0 | C. J. Law et al. (2023) | ||||
| 221106A | 56.70 | 25.57 | 0.2044 | 343.8 | -/0.9708 | R. M. Shannon et al. (2025) | ||||
| 230124 | 231.92 | 70.97 | 0.0939 | 590.574 | -/0.99 | K. Sharma et al. (2024) | ||||
| 230526A | 22.23 | 52.72 | 0.157 | 361.4 | -/0.997 | R. M. Shannon et al. (2025) | ||||
| 230626A | 235.63 | 71.13 | 0.327 | 452.723 | -/0.99 | K. Sharma et al. (2024) | ||||
| 230628A | 166.79 | 72.28 | 0.127 | 344.952 | -/0.95 | K. Sharma et al. (2024) | ||||
| 230708A | 303.12 | 55.36 | 0.105 | 411.51 | -/1.0 | R. M. Shannon et al. (2025) | ||||
| 230712A | 167.36 | 72.56 | 0.4525 | 587.567 | -/0.99 | K. Sharma et al. (2024) | ||||
| 230902A | 52.14 | 47.33 | 0.3619 | 440.1 | -/1.0 | R. M. Shannon et al. (2025) | ||||
| 231226A | 155.36 | 6.11 | 0.1569 | 329.9 | -/1.0 | R. M. Shannon et al. (2025) | ||||
| 240201A | 149.91 | 14.09 | 0.042729 | 374.5 | -/1.0 | R. M. Shannon et al. (2025) | ||||
| 240210A | 8.78 | 28.27 | 0.023686 | 283.73 | -/1.0 | R. M. Shannon et al. (2025) | ||||
| 240310A | 17.62 | 44.44 | 0.127 | 601.8 | -/0.9884 | R. M. Shannon et al. (2025) | ||||
| model parameters | results | |||||
|---|---|---|---|---|---|---|
| galaxy stellar mass cut | persistence threshold | [Mpc] | FRB number | tension | central overdensity | |
| 5 | 2 | 60 | 37 | 2.8 | ||
| 46 | 4.9 | |||||
| 26 () | 3.7 | |||||
| 34 () | 5.9 | |||||
| 100 | 37 | 1.3 | ||||
| 46 | 2.6 | |||||
| 170-220 | 37 | 0.6 | ||||
| 46 | 1.4 | |||||
| 5 | 60 | 37 | 1.4 | |||
| 46 | 2.9 | |||||
| 3 | 2 | 60 | 37 | 2.4 | ||
| 46 | 3.5 | |||||
| 5 | 2 | 60 | 37 | 3.2 | ||
| 3 | 2 | 60 | 37 | 3.2 | ||
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Taxonomy
TopicsGalaxies: Formation, Evolution, Phenomena · Cosmology and Gravitation Theories · Pulsars and Gravitational Waves Research
Constraining the Baryon Content of Cosmic Filaments Using Localized Fast Radio Bursts and DESI Imaging Data
Jian-Feng Mo
School of Physics and Astronomy, Sun Yat-Sen University, Zhuhai campus, No. 2, Daxue Road
Zhuhai, Guangdong, 519082, China
CSST Science Center for the Guangdong-Hong Kong-Macau Greater Bay Area, Daxue Road 2, 519082, Zhuhai, China
School of Physics and Astronomy, Sun Yat-Sen University, Zhuhai campus, No. 2, Daxue Road
Zhuhai, Guangdong, 519082, China
CSST Science Center for the Guangdong-Hong Kong-Macau Greater Bay Area, Daxue Road 2, 519082, Zhuhai, China
Qi-Rui Yang
School of Physics and Astronomy, Sun Yat-Sen University, Zhuhai campus, No. 2, Daxue Road
Zhuhai, Guangdong, 519082, China
CSST Science Center for the Guangdong-Hong Kong-Macau Greater Bay Area, Daxue Road 2, 519082, Zhuhai, China
Yi Zheng
School of Physics and Astronomy, Sun Yat-Sen University, Zhuhai campus, No. 2, Daxue Road
Zhuhai, Guangdong, 519082, China
CSST Science Center for the Guangdong-Hong Kong-Macau Greater Bay Area, Daxue Road 2, 519082, Zhuhai, China
Long-Long Feng
School of Physics and Astronomy, Sun Yat-Sen University, Zhuhai campus, No. 2, Daxue Road
Zhuhai, Guangdong, 519082, China
CSST Science Center for the Guangdong-Hong Kong-Macau Greater Bay Area, Daxue Road 2, 519082, Zhuhai, China Weishan Zhu [email protected]
Abstract
Cosmic filaments are thought to host a substantial fraction of the missing baryons at redshifts . In this study, we constraint the baryonic content of these filaments using localized Fast Radio Bursts (FRBs). Filaments are identified from the galaxy distribution in the Dark Energy Spectroscopic Instrument (DESI) imaging surveys using the DisPerSE algorithm. We find tentative evidence ( significance) for a divergence in the relationship between the dispersion measure (DM) contributed by the intergalactic medium and redshift for FRBs whose signals intersect cosmic filaments compared to those that do not, suggesting excess baryons in the filamentary structures. Assuming an isothermal -model gas profile with , this discrepancy is best explained by a central baryon overdensity of , broadly consistent with previous simulation and observational results. The inferred baryon fraction residing in filaments decreases with redshift, from approximately – at to – at , and – at . These estimates are likely lower bounds, particularly at , due to the limited number of identified filaments and localized FRBs at higher redshifts. We also examine various factors that may affect the statistical significance of our results. Our method offers an independent approach to tracing baryons in cosmic filaments and underscores the importance of expanding localized FRB samples and deepening galaxy surveys—key steps toward refining these estimates and addressing the missing baryon problem.
\uatCosmology343 — \uatLarge-scale structure of the universe902 — \uatCosmic Web330 —\uatIntergalactic medium813 —\uatRadio transient sources2008
††software: DisPerSE (T. Sousbie, 2011; T. Sousbie et al., 2011)
1 Introduction
According to the cosmology (e.g., Planck Collaboration et al. 2016), of the energy density in the universe are made up by baryonic matter. However, a significant portion, about –, at redshift are ‘missing’ from detection for a long time (M. Persic & P. Salucci 1992; M. Fukugita et al. 1998; J. M. Shull et al. 2012; C. W. Danforth et al. 2016). Meanwhile, simulations predicted that approximately – of the baryons reside within the filamentary structures of cosmic web ( R. Cen & J. P. Ostriker 1999; R. Davé et al. 2001; M. Haider et al. 2016; W. Zhu & L.-L. Feng 2017; W. Cui et al. 2018) at . Furthermore, simulations indicate that cosmic filaments host approximately – of the warm-hot intergalactic medium (WHIM), which is believed to account for the majority of ‘missing’ baryons (D. Martizzi et al. 2019; T. Tuominen et al. 2021).
A variety of observational techniques have been developed to detect baryons in cosmic filaments, including X-ray emission and absorption (e.g., J. N. Bregman et al. 2009; D. Eckert et al. 2015; H. Akamatsu et al. 2017; T. Fang et al. 2002; F. Nicastro et al. 2005; M. Bonamente et al. 2016; F. Nicastro et al. 2018; J. Nevalainen et al. 2019; H. Tanimura et al. 2020b;K. Migkas et al. 2025), the thermal Sunyaev-Zel’dovich (SZ) effect (V. Bonjean et al. 2018; H. Tanimura et al. 2019; A. de Graaff et al. 2019; H. Tanimura et al. 2020a). However, the statistical significance of many of these detections remains at the – level. In addition, several reported detections require further confirmation. Continued development of complementary observational tools is crucial for robustly identifying and quantifying the baryon content in cosmic filaments.
Fast radio bursts (FRBs) are luminous and millisecond-duration events, though their physical origin is still an open question (D. R. Lorimer et al. 2007; J. M. Cordes & S. Chatterjee 2019; B. Zhang 2023). As FRB signals propagate through ionized plasma, lower frequencies are delayed relative to higher ones—a phenomenon quantified by the dispersion measure (DM), which reflects the integrated free electron density along the line of sight (L.O.S.). M. McQuinn (2014) first proposed using the DM of FRBs to probe the universe’s missing baryons, and subsequent studies have made significant progress.
J. P. Macquart et al. (2020) analyzed the DM of seven well-localized, low-redshift FRBs and measured the cosmic baryon density as , broadly consistent with estimates from cosmic microwave background (CMB) observations (Planck Collaboration et al., 2016), albeit with large statistical uncertainties. K. B. Yang et al. 2022 used 22 localized FRBs to measure the baryon content in the universe, giving in 1 confidence level. More recently, L. Connor et al. (2025) further used a larger sample of 69 localized FRBs to yield . Despite these advancements, such studies do not resolve the detailed distribution of baryons within collapsed halos and the cosmic web.
Based on cosmological hydrodynamical simulations, W. Zhu et al. (2018) demonstrated that ionized baryons in cosmic filaments contribute approximately – of the total DM of FRBs at . Furthermore, W. Zhu & L.-L. Feng (2021) found that the median DM contribution from foreground halos is about of that from the intergalactic medium (IGM), albeit with substantially variance. More recently, several studies have reported cases where FRB signals intersect individual foreground halos, groups, walls, or filaments (e.g., S. Simha et al. 2020; K.-G. Lee et al. 2023; S. Simha et al. 2023; I. S. Khrykin et al. 2024; J. T. Faber et al. 2024; K. Shin et al. 2024). These developments make it increasingly feasible to estimate the specific DM contributions from ionized baryons in collapsed halos and cosmic web, offering a path toward constraining their detailed baryon distributions.
With the growing number of well-localized events (e.g., S. P. Tendulkar et al. 2017; K. E. Heintz et al. 2020; CHIME/FRB Collaboration et al. 2021; C. J. Law et al. 2023; J.-f. Mo et al. 2025), FRBs are becoming a powerful tool to probe baryons in cosmic filaments. At , filaments occupy of the cosmic volume, and high-redshift FRBs can intersect multiple filaments. Due to the inhomogeneous filament distribution, even FRBs at similar redshifts may traverse different numbers of filaments, leading to variation in their extragalactic DMs. However, this signal is complicated by contributions from host galaxies, their CGM, and foreground halos (W. Zhu & L.-L. Feng 2021; J.-f. Mo et al. 2025). A statistically large sample of localized FRBs is thus crucial to improve signal-to-noise when comparing DMs of FRBs that intersect filaments to those that do not.
This paper probes the baryonic content of cosmic filaments using localized FRBs. Section 2 outlines the data and methodology used to detect baryons in filaments and estimate their baryon content; Section 3 presents the results; Section 5 summarizes our conclusions. Factors affecting the statistical significance are discussed in the Appendix. We adopt cosmological parameters: , , and (Planck Collaboration et al., 2016).
2 Methodology
2.1 Galaxy catalog from DESI Legacy Imaging Surveys and filaments
H. Zou et al. (2019) published a catalog of photometric redshifts and stellar masses for 300 million galaxies from the DESI Legacy Imaging Surveys (A. Dey et al., 2019), covering over 14,000 . The galaxies span redshifts up to and stellar masses from to . The sky coverage is shown in blue in the top panel of Figure 1.
Using this galaxy catalog, we identify cosmic filaments using the DisPerSE algorithm111https://www2.iap.fr/users/sousbie/web/html/indexd41d.html? (T. Sousbie, 2011; T. Sousbie et al., 2011), which is widely applied to both observations (e.g., SDSS; N. Malavasi et al. 2020) and simulations (e.g., MillenniumTNG; D. Galárraga-Espinosa et al. 2024) in both two-dimensional (e.g., C. J. O’Kane et al., 2024) and three-dimensional (e.g., Y. M. Bahe & P. Jablonka, 2025; Q.-R. Yang et al., 2025) analyses.
Given the photometric redshift uncertainty of 0.02 in the DESI Legacy Imaging Surveys catalog (H. Zou et al., 2019), we divide the galaxy sample into 20 redshift bins of across . In each bin, cosmic filaments are identified in 2D using DisPerSE, based on the galaxies’ right ascension (RA) and declination (DEC). DisPerSE constructs the density field with the Delaunay Tessellation Field Estimator (DTFE; W. E. Schaap & R. van de Weygaert 2000; R. van de Weygaert & W. Schaap 2009) and extracts filamentary structures via discrete Morse theory by identifying critical points (minima, saddles, and maxima) in the gradient field.
In DisPerSE, filaments are defined as pairs of field lines connecting saddle points to maxima. To filter out noise, DisPerSE applies persistence theory, which measures the topological significance of structures. Following N. Malavasi et al. (2020), we adopt persistence thresholds of nsig=3 and 5, corresponding to 3 and 5 significance levels. While nsig=5 yields more robust filaments, it may exclude weaker but real structures. We use nsig=5 as the default and compare with nsig=3 to assess threshold sensitivity. Further implementation details are provided in the Appendix A.
The middle panel of Figure 1 shows filament identification in the redshift range [math]– across the northern sky, using persistence thresholds of nsig = 3 (top) and nsig = 5 (middle), overlaid on the galaxy distribution. The bottom panel displays the number of galaxies and filaments per redshift bin. Filament identification becomes incomplete beyond due to the decreasing number of galaxies in the DESI imaging survey at higher redshifts.
2.2 Two groups of localized FRBs: intersected filaments or not
We use 84 localized FRBs, combining the 71 events compiled by J.-f. Mo et al. (2025) with 13 new ones—11 from the CRAFT survey (R. M. Shannon et al., 2025) and 2 from CHIME/FRB (X.-L. Chen et al., 2025; V. Shah et al., 2025). Their sky positions are shown as red pentagrams in the top panel of Figure 1. Of these, 46 lie within the DESI area. From this subset, we select 37 high-confidence FRBs (with or ) to test whether their lines of sight intersect cosmic filaments. The 37 FRBs are divided into two groups: ‘Pass’, whose lines of sight intersect filaments from the galaxy catalog of DESI imaging surveys within redshift bins (), and ‘NoPass’, which do not intersect any filament. The filament redshift in each bin is approximated as .
To identify filaments intersected by FRB sightlines, we estimate their angular width as , where is the initial estimate of filament radius and is the comoving distance to the filament’s redshift bin. The choice of is motivated by Q.-R. Yang et al. (2025), who find most filaments are less than 2Mpc across. A filament is considered intersected if the FRB’s sky position falls within its projected angular width and its redshift exceeds that of the filament. This selection method is illustrated in the upper panel of Figure 2.
To validate candidate filaments, we estimate their physical radius, , using the correlation with stellar mass per unit length from Q.-R. Yang et al. (2025), then check if the FRB line of sight intersects the filament’s cylindrical region of radius in 3D space (see lower panel of Figure 2). More details are provided in the Appendix B. FRBs meeting this criterion form the ‘Pass’ subgroup. Among 37 securely localized FRBs, we find 7 intersect filaments in our default catalog, totaling 12 crossings. Table 1 lists their classifications, number of intersections, and filament redshifts. We also determine the specific intersection paths (e.g., red segment in the bottom panel of Figure 2) used to model , the dispersion measure from baryonic gas in filaments, as described below.
2.3 Modeling of DM caused by baryons in intersecting filaments
The DM in the rest frame is defined as the integral of the free electron number density along the L.O.S., i.e.,
[TABLE]
For those FRBs whose sightlines intersect cosmic filaments, we estimate the DM caused by filaments using the gas density profile modeled as an isothermal single model with , following W. Zhu et al. (2021), i.e.,
[TABLE]
where the core radius is set to , and the central gas density is , where is the central overdensity, is the baryon density at , and is the critical density; is the Hubble constant at , is the Newtonian gravitational constant. According to Q.-R. Yang et al. (2025), we assume is redshift-independent.
Considering a hydrogen (H) mass fraction of and a helium (He) mass fraction of , along with ionization fractions for filaments at redshift (W. Deng & B. Zhang, 2014), the resulting free electron number density in the filament is given by:
[TABLE]
where is the mass of proton.
The DM contributed by an intersecting filament, , is computed using Equation 1, with the integration path defined as in the previous section (see red line in the bottom panel of Figure 2).
2.4 Estimation of baryon mass in filaments
The observed DM of FRBs is the sum of multiple components:
[TABLE]
where the subscripts ‘MW,ISM’, ‘MW,halo’, ‘IGM’, ‘Host’, ‘ForeH’ refer to the Milky Way’s interstellar medium, Milky Way halo, intergalactic medium, the host galaxy and its halo, and foreground galaxy halos, respectively. The redshifts of the host and foreground halos are denoted by and . The factors account for the scaling relations between and frequency , along with time dilation and redshift resulting from cosmic expansion (K. Ioka, 2003). The observed total DM and redshift distribution for the 37 well-localized FRBs are shown in the top-left panel of Figure 3.
includes contributions from diffuse gas outside halos—voids, walls, and filaments—with the filamentary part denoted as . FRBs in the ‘Pass’ group, which intersect filaments, are expected to have systematically higher than those in the ‘NoPass’ group, especially at higher redshifts where more filaments are crossed. We estimate from the offset between the – relations of the two groups. is obtained by subtracting contributions from the Milky Way (ISM and halo), the host galaxy (and its halo), and foreground halos from the total observed DM.
We estimate using the NE2001 model (J. M. Cordes & T. J. W. Lazio, 2002), though the YMW16 model (J. M. Yao et al., 2017) is an alternative. The top right panel of Figure 3 shows the DMs of the 37 localized FRBs after subtracting . is assumed to be a constant , based on S. Yamasaki & T. Totani (2020) with a confidence range of –. As this value is applied uniformly, it does not affect the relative – differences between the Pass and NoPass groups.
For the host galaxy contribution, , we adopt a log-normal distribution with median and shape parameter , following L. Connor et al. (2025), which based on a sample of 69 localized FRBs. Following G. Q. Zhang et al. (2020), we assume redshift evolution as . For comparison, J.-F. Mo et al. (2023) suggested a weaker evolution, , assuming FRBs trace the cosmic star formation rate. The uncertainty, , is estimated from the median–16th percentile difference, yielding , which dominates the error at . We propagate this and adopt . The impact of a larger is explored in the fourth paragraph of Appendix C. A larger , which corresponds to a larger , tends to alleviate the tensions in the - relation between the ‘Pass’ and ‘NoPass’ groups, as shown in Table 2.
To estimate the DM from intervening foreground halos, , we identify candidate halos from the DESI group catalog (X. Yang et al., 2021). A halo contributes if the FRB’s L.O.S. intersects its region and no filament intersects the same L.O.S. within the halo’s redshift bin or its two adjacent bins—this avoids double-counting due to photometric redshift uncertainties and group–filament associations. For qualifying halos, we compute following Y. Huang et al. (2025). We assume halos with follow a modified NFW (mNFW) gas profile (J. X. Prochaska & Y. Zheng, 2019):
[TABLE]
where denotes the central gas density as a function of halo mass; with being the concentration parameter; Following Y. Huang et al. (2025), we fix and to 2. The hot gas fraction, , is calibrated using -based scaling relations from P. Popesso et al. (2024):
[TABLE]
where is mass within . For halos with , we adopt the ICM model from A. Vikhlinin et al. (2006), updating the gas fraction using the same equation above. In both the mNFW (group-scale) and ICM (cluster-scale) models, the gas profile is truncated at . is computed by integrating the gas density along the FRB sightline using the Ne_Rperp routine from J. X. Prochaska et al. (2025).
After subtracting contributions from the Milky Way, host galaxy and CGM, and foreground halos, we obtain and its uncertainty for FRBs in both ‘Pass’ and ‘NoPass’ groups. We then estimate the baryonic mass in filaments by analyzing the difference in their – relations. The procedure is detailed below.
We first fit a linear function, , to the – relation for the ‘NoPass’ subgroup, following J. M. Cordes et al. (2022) and J.-f. Mo et al. (2025), who find this relation can be approximated as linear. For FRBs in ‘Pass’ group, we assume a constant filament baryon central overdensity (10–100) and estimate using the method in Section 2.3. The DM caused by the diffuse IGM in voids and walls, i.e., excluding filament contributions, is then .
We use the Python package emcee (D. Foreman-Mackey et al., 2013) to run Markov Chain Monte Carlo (MCMC) simulations and infer the optimal filament central overdensity by minimizing the difference between the corrected – relation and the linear fit . The adopted log-likelihood function is:
[TABLE]
where , with representing the uncertainty in for the -th FRB in the ‘Pass’ group at redshift , and denoting the fitting error of the linear function at .
With the optimal central overdensity determined, the total gas mass in a filament is calculated as:
[TABLE]
where is the filament length, its radius, and the radial gas density profile.
The gas mass density from filaments in the -th redshift bin is calculated by summing the gas masses of all identified filaments in that bin and dividing by the corresponding comoving volume:
[TABLE]
where is the number of filaments in the bin, is the comoving volume between redshifts and , and is the DESI sky area fraction (X. Yang et al., 2021).
For each redshift bin, the baryon fraction in filaments is , where is the critical density at the bin’s median redshift. The average value for is denoted as .
3 Results
3.1 – relationships of two FRB groups
Among 37 securely localized FRBs in the DESI area, 7 intersect filaments identified by DisPerSE using galaxies with and nsig=5, while 30 do not (see Figure 3). We quantify the difference by fitting separate linear regressions to the – relations for the ‘Pass’ and ‘NoPass’ groups. The best-fit relations are:
[TABLE]
[TABLE]
The parameter covariance matrices are and . The difference between the fit parameters is given by , and the chi-square statistic is , yielding a p-value of 0.006, or , assuming a chi-square distribution with 2 degrees of freedom. This result indicate a statistically significant difference in the – relation between the ‘Pass’ and ‘NoPass’ groups.
J. M. Cordes et al. (2022) found assuming a constant IGM fraction , while J.-f. Mo et al. (2025) reported using a redshift-dependent from TNG100. These values fall between our ‘Pass’ and ‘NoPass’ results—higher than the latter and lower than the former—as expected, since they reflect the average IGM contribution, including diffuse gas in voids, walls, and filaments.
As shown in the bottom left panel of Figure 3, the – relations for the ‘Pass’ and ‘NoPass’ groups diverge at higher redshifts, as distant FRBs are more likely to intersect filaments, increasing their . This difference becomes more significant with larger samples—reaching with all 46 FRBs in the DESI area, and up to when considering only those at . Using a lower persistence threshold (nsig=3) reduces the significance to (37 FRBs) and (46 FRBs). Details on the factors affecting this significance, including number of localized FRBs, the redshift range of selected samples, the assumed , and filaments classification procedure are provided in Appendix C.
3.2 Baryon mass in filaments
Using the method in Section 2.4, we perform MCMC sampling with 10 walkers, 500 burn-in steps, and 5000 total steps to estimate the optimal central baryon overdensity in filaments. Convergence, typically achieved when the chain length exceeds (D. Foreman-Mackey et al., 2013), was reached after steps in our case.
The MCMC analysis yields an optimal central overdensity of , assuming an isothermal single- model with . The corrected , , are shown in the bottom right panel of Figure 3, with values listed in Table 1. On average, each intersected filament contributes about .
This best-fit central overdensity is broadly consistent with predictions from hydrodynamical simulations (e.g., W. Zhu & L.-L. Feng 2017; D. Martizzi et al. 2019; T. Tuominen et al. 2021; W. Zhu et al. 2021; D. Galárraga-Espinosa et al. 2022; Q.-R. Yang et al. 2025) and aligns well with several observational estimates. It agrees with from tSZ measurements of filaments identified in SDSS DR12 (H. Tanimura et al., 2020a) and from X-ray emission measurements of filaments using SRG/eROSITA (H. Tanimura et al., 2022), but is higher than the – values reported by H. Tanimura et al. (2019) and A. de Graaff et al. (2019) based on tSZ measurements of filaments between galaxy group pairs.
Using Equations 8 and 9, we derive the baryon mass fraction in filaments for each redshift bin, shown in Figure 4. With nsig=5 in filament identification, the fraction declines from at to at , and at . Lowering the threshold to nsig=3 raises these to , , and , respectively. The bump in between and is due to a higher filament count in that range (Figure 1). Averaged over , filaments contribute for nsig=5 and for nsig=3.
Our measurement agrees with the tSZ-based estimate from H. Tanimura et al. (2020a), who found for SDSS filaments at . More recently, Li et al. (submitted) used Planck Compton- and CMB lensing maps to estimate at for long filaments (30–100 ) identified from SDSS DR12, and for filaments of all lengths.
Even with nsig=3, the derived filament baryon fractions at are still below the – predicted by simulations (e.g., W. Zhu & L.-L. Feng 2017; N. I. Libeskind et al. 2018). This discrepancy likely stems from the incompleteness of our filament sample, limited by the galaxy density in the DESI imaging catalog—especially at , where many filaments may be missed.
4 Summary
We classify fast radio bursts (FRBs) into two groups based on whether their lines of sight intersect cosmic filaments (‘Pass’) or not (‘NoPass’), with filaments identified using the DisPerSE algorithm applied to galaxies with from DESI imaging surveys. We find tentative () evidence for a divergence in the – relation between the two groups. Assuming this divergence arises from ionized baryons in filaments and modeling their gas with an isothermal -profile (), MCMC analysis yields a central baryon overdensity of .
The inferred central overdensity broadly aligns with both hydrodynamical simulations and observational estimates from tSZ and X-ray data. Using this value, we estimate that filaments host – at . The fraction declines from – at to – at , and – at . These values likely represent lower limits due to catalog incompleteness, especially at .
This study offers an independent method to trace baryons in cosmic filaments and refine their density estimates, contributing to resolving the missing baryon problem. Our findings underscore the need for larger samples of localized FRBs and galaxies, along with complementary probes like X-ray emission and the Sunyaev-Zel’dovich effect, for further validation and improvement.
We performed a simplified random modeling analysis and found that approximately 90–100 high-confidence localized FRBs are needed to reach a tension in the – relation between the ‘Pass’ and ‘NoPass’ groups, if , which is more conservative than the adopted in our default model. We generate mock FRBs with redshifts drawn from the distribution of all localized FRBs in the DESI region. A Pass-to-NoPass ratio of 1:4 was adopted for mock events, which is similar to the observed ratio of 7:30 among the 37 securely localized FRBs. Their values were assigned by sampling from log-normal distributions with variance and mean values determined by the corresponding fitted – relations derived from these 37 FRBs under .
We thank the anonymous referee for his/her valuable suggestions, which have helped improve the manuscript. We thank Zhi-Qi Huang for his helpful discussion. This work is supported by the National Natural Science Foundation of China (NFSC) through grant 11733010, 12173102, and 12203107, and by the China Manned Space Program through its Space Application System.. This work has used the HPC facility of the School of Physics and Astronomy, Sun Yat-Sen University.
{contribution}WSZ conceived the initial research concept and was responsible for writing and submitting the manuscript. JFM conducted the formal analysis and validation and also contributed to the initial draft. QRY, YZ, and LLF contributed to both the analysis and the development of the research concept.
Appendix A filament classification
The details for how we identify filaments from the galaxy catalog in DESI imaging survey using DisPerSE algorithm are as follows. We first compute the 2D density field of the galaxy distribution using the delaunay_2D function in DisPerSE, which implements the Delaunay Tessellation Field Estimator (DTFE; W. E. Schaap & R. van de Weygaert 2000; R. van de Weygaert & W. Schaap 2009). We select galaxies with stellar masses , a mass cut consistent with a number of previous studies (e.g. D. Galárraga-Espinosa et al. 2024; C. J. O’Kane et al. 2024; Q.-R. Yang et al. 2025). To deal with boundary conditions in the observational sample area, D. J. Cornwell et al. (2022) generated a random uniform distribution of artificial galaxies beyond the boundary. Similarly, we utilize the -btype smooth parameter in the delaunay_2D function, consistent with N. Malavasi et al. (2020). This approach adds supplementary particles outside the boundary by interpolating the estimated density within boundary.
Next, we smooth the density field one time using the netconv function, which averages the density values with those of their direct neighbors in the network. Subsequently, we extract filaments from the smoothed galaxy density field using the mse function, which implements discrete Morse theory. This involves computing the gradients of the density field and identifying critical points (minima, saddles, and maxima) where the gradient vanishes. A filament is defined by the skelconv function as two field lines originating from a saddle point and connecting two maxima. The resulting filament skeleton remains unsmoothed in this work.
Spurious filaments, likely arising from Poisson noise in the discrete galaxy distribution, are eliminated using persistence theory within DisPerSE. Following N. Malavasi et al. (2020), we set the nsig parameter in the mse function to 3 or 5. This means structures with a probability less than 3 or 5 of appearing in a random field are removed. Consequently, filaments extracted with a higher persistence threshold are more robust than those extracted with a lower threshold, but may lose real weak filaments. With due caution, we adopt results with a 5 (nsig=5) persistence threshold as our default sample of filaments, which will compared with results with nsig=3 to inspect the impact.
As an example, the middle panel in Figure 1 show filaments identified within redshift range using a nsig=3 and nsig=5, respectively, alongside the galaxy distribution. The bottom panel in Figure 1 shows the numbers of galaxies and filaments we identified in each redshift bin.
Appendix B Procedures of identifying intersected filaments
After finding candidate intersected filaments, we estimate their physical radius, , based on the correlation between the and the stellar mass per unit length contained within the filament found by Q.-R. Yang et al. (2025). Based on the Illustris-TNG simulation, Q.-R. Yang et al. (2025) find that correlates with the stellar mass per unit length contained within the filament, denoted as . In this context, is defined as the radial distance from the filament spine at which the gas density drops to the mean cosmic baryon density. The relationship between and is provided by fitting results at redshifts 0, 0.5, 1.0, and 2.0 as follows:
[TABLE]
where is the filament length in comoving kiloparsecs (ckpc), while and are given in ckpc and solar masses (), respectively. To estimate at arbitrary redshifts,we apply linear interpolation between the fitting relations at , 0.5, 1.0, and 2.0.
Using the filament skeleton determined by DisPerSE as the central axis, we calculate the total stellar mass within a cylindrical volume of initial radius 2 Mpc from the galaxy catalog. From this, we obtain an initial estimate of the filament radius via Equation LABEL:eqn:filament_radius_vs_M. This radius is then iteratively refined by repeating the procedure: updating the cylindrical radius and recalculating the enclosed stellar mass. The iteration proceeds until the relative change in radius between steps falls below , or a maximum of 10 iterations is reached. The final value is adopted as , with an upper limit of 5 Mpc imposed to avoid overestimation. It is worth noting that limited galaxy sampling in the DESI imaging survey at high redshift may lead to underestimated filament radii.
With the improved estimation of filament widths, we then verify whether FRB line of sight (L.O.S.) intersects the candidate filaments in three-dimensional space, and subsequently compute the corresponding . This process involves converting the FRB and filament positions from sky coordinates to Cartesian coordinates using the following transformation:
[TABLE]
An FRB is considered to intersect a filament if its line of sight passes through the filament’s cylindrical region of radius in three-dimensional space. The intersection path is shown as the red segment in the bottom panel of Figure 2.
Appendix C factors may influence the statistical significance
Several factors may influence the statistical significance of our results, including the number and reliability of localized FRBs, the redshift distribution of the selected sample, the uncertainty in (), the method used to classify filaments, and the assumed value of the initial filament radius . We examine these aspects below.
Increasing the number of well-localized FRBs is essential to enhance the robustness of our conclusions. As illustrated in the left column of Figure 5, when all localized FRBs within the DESI sky area () are included, the difference in the – relations between the ‘Pass’ and ‘NoPass’ groups reaches a statistical significance of .
Focusing exclusively on localized FRBs at intermediate to high redshifts can improve the statistical significance of our results, as the relative contribution of the IGM to the total DM increases with redshift compared to nearby events. To evaluate this effect, we repeat our analysis using securely localized FRBs with () and nsig=5, while keeping all other procedures unchanged. This yields evidence for a divergent trend in the – relation between the ‘Pass’ and ‘NoPass’ groups. When applying the same analysis to the full sample of localized FRBs within the DESI sky coverage at (), the statistical significance increases to . Therefore, the accumulation of additional localized FRBs at in the future will be crucial for strengthening the statistical robustness of the – relations and further testing our findings.
Our default model adopts an uncertainty of (L. Connor et al., 2025), yielding a level of significance for the securelylocalized FRB sample (). Increasing to reduces the significance to . Considering an even larger uncertainty based on the redshift-evolving model from TNG simulations by J.-F. Mo et al. (2023), which suggests –, the significance further decreases to . The relatively large uncertainty in arises from the diversity of host galaxy types among localized FRBs, including both star-forming and quiescent systems, as well as spiral and elliptical morphologies. However, the impact of this large —and consequently the uncertainty in —is expected to decline as the number of localized FRBs increases. For instance, applying the same analysis to all localized FRBs within the DESI sky coverage () yields improved significance levels of and when adopting and –, respectively—demonstrating that a larger sample size can mitigate the effects of increased uncertainty in and .
We also evaluate the impact of using filaments extracted with a lower persistence threshold of nsig=3, compared to the default nsig=5, based on the 37 securelylocalized FRB samples and assuming . This lower threshold increases the number of FRBs whose sightlines intersect filaments—including those deemed less significant—raising the count to 17, in contrast to 7 under the nsig=5 setting (see the right panel of Figure 5). Under these conditions, the statistical significance of the difference in the – relation between the ‘Pass’ and ‘NoPass’ groups reaches . Furthermore, when the full set of 46 localized FRBs within the DESI sky coverage is used, the corresponding significance increases to .
The choice of input galaxy data influences the reconstructed density field and, consequently, the filament extraction. We test an alternative selection by using galaxies with stellar masses to identify filaments and find a statistical significance of for both nsig=5 and nsig=3 persistence thresholds. Additionally, we examine the impact of the adopted initial guess for the filament width, . When setting Mpc, the significance of the difference between the ‘Pass’ and ‘NoPass’ groups drops to for the securelylocalized FRB sample (), and to for the full localized FRB sample within the DESI sky area (). A summary of all these tests is provided in Table 2.
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