Reconstruction Codes for Deletions and Insertions: Connection, Distinction, and Construction
Yubo Sun, Gennian Ge

TL;DR
This paper explores the bounds and constructions of reconstruction codes for deletions and insertions, revealing fundamental connections, distinctions, and new bounds for minimum redundancy in various scenarios.
Contribution
It establishes a key connection between deletion and insertion reconstruction codes, disproves a conjecture, and constructs codes with tight bounds for small N values.
Findings
Reconstruction codes for insertions are less redundant than for deletions when N=O(n^{t-1}).
Disproved a previous conjecture about deletion reconstruction code redundancy.
Constructed codes with explicit bounds for N up to 5, extending prior results.
Abstract
Let be an error ball function. A set of -ary sequences of length is referred to as an \emph{-reconstruction code} if each sequence within this set can be uniquely reconstructed from any distinct elements within its error ball . The main objective in this area is to determine or establish bounds for the minimum redundancy of -reconstruction codes, denoted by . In this paper, we investigate reconstruction codes where the error ball is either the \emph{-deletion ball} or the \emph{-insertion ball} . Firstly, we establish a fundamental connection between reconstruction codes for deletions and insertions. For any positive integers , any -reconstruction code is also an…
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Taxonomy
TopicsDNA and Biological Computing · Algorithms and Data Compression · semigroups and automata theory
