Decorrelated feature importance from local sample weighting

TL;DR

This paper introduces losaw, a local sample weighting method that decorrelates features to improve feature importance accuracy and model performance in correlated data settings, applicable to various ML models.

Contribution

The paper proposes a novel local sample weighting technique, losaw, to enhance feature importance estimation and model accuracy in the presence of feature correlation.

Findings

losaw improves feature importance scores consistently.

losaw enhances out-of-distribution prediction accuracy.

losaw maintains in-distribution accuracy.

Abstract

Feature importance (FI) statistics provide a prominent and valuable method of insight into the decision process of machine learning (ML) models, but their effectiveness has well-known limitations when correlation is present among the features in the training data. In this case, the FI often tends to be distributed among all features which are in correlation with the response-generating signal features. Even worse, if multiple signal features are in strong correlation with a noise feature, while being only modestly correlated with one another, this can result in a noise feature having a distinctly larger FI score than any signal feature. Here we propose local sample weighting (losaw) which can flexibly be integrated into many ML algorithms to improve FI scores in the presence of feature correlation in the training data. Our approach is motivated from inverse probability weighting in causal inference and locally, within the ML model, uses a sample weighting scheme to decorrelate a target feature from the remaining features. This reduces model bias locally, whenever the effect of a potential signal feature is evaluated and compared to others. Moreover, losaw comes with a natural tuning parameter, the minimum effective sample size of the weighted population, which corresponds to an interpretation-prediction-tradeoff, analog to a bias-variance-tradeoff as for classical ML tuning parameters. We demonstrate how losaw can be integrated within decision tree-based ML methods and within mini-batch training of neural networks. We investigate losaw for random forest and convolutional neural networks in a simulation study on settings showing diverse correlation patterns. We found that losaw improves FI consistently. Moreover, it often improves prediction accuracy for out-of-distribution, while maintaining a similar accuracy for in-distribution test data.