Generation of Synthetic Clinical Text: A Systematic Review

TL;DR

This systematic review analyzes methods, purposes, and evaluation techniques for generating synthetic clinical text, highlighting transformer-based models' prominence, their utility in NLP tasks, and ongoing privacy concerns.

Contribution

It provides a comprehensive overview of recent advances in synthetic clinical text generation, emphasizing the dominant techniques, evaluation metrics, and practical applications.

Findings

Transformer architectures, especially GPTs, are predominant in synthetic text generation.

Synthetic medical text improves NLP task performance and data augmentation.

Privacy remains a challenge, requiring further assessment to prevent sensitive information leakage.

Abstract

Generating clinical synthetic text represents an effective solution for common clinical NLP issues like sparsity and privacy. This paper aims to conduct a systematic review on generating synthetic medical free-text by formulating quantitative analysis to three research questions concerning (i) the purpose of generation, (ii) the techniques, and (iii) the evaluation methods. We searched PubMed, ScienceDirect, Web of Science, Scopus, IEEE, Google Scholar, and arXiv databases for publications associated with generating synthetic medical unstructured free-text. We have identified 94 relevant articles out of 1,398 collected ones. A great deal of attention has been given to the generation of synthetic medical text from 2018 onwards, where the main purpose of such a generation is towards text augmentation, assistive writing, corpus building, privacy-preserving, annotation, and usefulness. Transformer architectures were the main predominant technique used to generate the text, especially the GPTs. On the other hand, there were four main aspects of evaluation, including similarity, privacy, structure, and utility, where utility was the most frequent method used to assess the generated synthetic medical text. Although the generated synthetic medical text demonstrated a moderate possibility to act as real medical documents in different downstream NLP tasks, it has proven to be a great asset as augmented, complementary to the real documents, towards improving the accuracy and overcoming sparsity/undersampling issues. Yet, privacy is still a major issue behind generating synthetic medical text, where more human assessments are needed to check for the existence of any sensitive information. Despite that, advances in generating synthetic medical text will considerably accelerate the adoption of workflows and pipeline development, discarding the time-consuming legalities of data transfer.