Automatic Fine-grained Segmentation-assisted Report Generation

TL;DR

This paper introduces ASaRG, an extension of LLaVA that incorporates fine-grained segmentation maps for improved clinical report generation, demonstrating significant performance gains and enhanced grounding capabilities.

Contribution

ASaRG fuses segmentation maps into LLaVA's architecture, achieving better performance and interpretability in medical report generation with minimal additional parameters.

Findings

+0.89% CE F1 score with intermediate features

+2.77% CE F1 score with segmentation maps

Performance gains over existing segmentation-based methods

Abstract

Reliable end-to-end clinical report generation has been a longstanding goal of medical ML research. The end goal for this process is to alleviate radiologists' workloads and provide second opinions to clinicians or patients. Thus, a necessary prerequisite for report generation models is a strong general performance and some type of innate grounding capability, to convince clinicians or patients of the veracity of the generated reports. In this paper, we present ASaRG (\textbf{A}utomatic \textbf{S}egmentation-\textbf{a}ssisted \textbf{R}eport \textbf{G}eneration), an extension of the popular LLaVA architecture that aims to tackle both of these problems. ASaRG proposes to fuse intermediate features and fine-grained segmentation maps created by specialist radiological models into LLaVA's multi-modal projection layer via simple concatenation. With a small number of added parameters, our approach achieves a +0.89\% performance gain ($p=0.012$) in CE F1 score compared to the LLaVA baseline when using only intermediate features, and +2.77\% performance gain ($p<0.001$) when adding a combination of intermediate features and fine-grained segmentation maps. Compared with COMG and ORID, two other report generation methods that utilize segmentations, the performance gain amounts to 6.98\% and 6.28\% in F1 score, respectively. ASaRG is not mutually exclusive with other changes made to the LLaVA architecture, potentially allowing our method to be combined with other advances in the field. Finally, the use of an arbitrary number of segmentations as part of the input demonstrably allows tracing elements of the report to the corresponding segmentation maps and verifying the groundedness of assessments. Our code will be made publicly available at a later date.