Asymptotically Optimal Codes Correcting One Substring Edit
Yuting Li, Yuanyuan Tang, Hao Lou, Ryan Gabrys, Farzad Farnoud

TL;DR
This paper introduces a coding scheme that corrects a single substring edit with redundancy close to the theoretical minimum, improving error correction efficiency for localized string modifications.
Contribution
The paper presents an asymptotically optimal code construction for correcting one substring edit with minimal redundancy, advancing error correction capabilities.
Findings
Redundancy of the constructed codes is log n + O(log log n), matching the lower bound.
The code corrects localized substring edits including insertions, deletions, and substitutions.
Achieves near-optimal redundancy for correcting one substring edit.
Abstract
The substring edit error is the operation of replacing a substring of with another string , where the lengths of and are bounded by a given constant . It encompasses localized insertions, deletions, and substitutions within a window. Codes correcting one substring edit have redundancy at least . In this paper, we construct codes correcting one substring edit with redundancy , which is asymptotically optimal.
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Taxonomy
TopicsDNA and Biological Computing · Algorithms and Data Compression · Network Packet Processing and Optimization
