Dealing with separation problem in hidden Markov models with covariates based on a penalized maximum likelihood approach
Luca Brusa, Fulvia Pennoni, Francesco Bartolucci, Romina Peruilh Bagolini

TL;DR
This paper introduces a penalized maximum likelihood method to address the separation problem in hidden Markov models with covariates, improving estimation accuracy for binary and categorical data.
Contribution
It proposes a novel penalized likelihood approach with cross-validation for selecting model complexity and penalty smoothness, specifically tackling latent state separation issues.
Findings
Enhanced parameter estimation accuracy in simulations
Improved computational efficiency over existing methods
Effective modeling of longitudinal anesthesia data
Abstract
A penalized maximum likelihood estimation approach is proposed for discrete-time hidden Markov models where covariates affect the observed responses and serial dependence is considered. The proposed penalized maximum likelihood method addresses the issue of latent state separation that typically occurs when this model is applied to binary and categorical response variables with a limited number of categories, resulting in extremely large estimates of the support points of the latent variable assumed with a discrete, left unspecified distribution. We also propose a cross-validation approach for jointly selecting the number of hidden states and the roughness of the penalty term. The proposal is illustrated through a simulation study comparing parameter estimation accuracy and computational efficiency across different estimation procedures. We also demonstrate the potential of this class…
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