SciMantify -- A Hybrid Approach for the Evolving Semantification of Scientific Knowledge
Lena John, Kheir Eddine Farfar, S\"oren Auer, Oliver Karras

TL;DR
SciMantify introduces a hybrid, collaborative approach for transforming scientific publications from static PDFs into rich, semantic knowledge graphs, enhancing accessibility and reusability of scientific data.
Contribution
It presents a novel evolution model and a hybrid workflow leveraging human-machine collaboration for semantic semantification of scientific knowledge.
Findings
Reduces effort in semantification process
Improves alignment with knowledge graph structures
Simplifies preprocessing of scientific knowledge
Abstract
Scientific publications, primarily digitized as PDFs, remain static and unstructured, limiting the accessibility and reusability of the contained knowledge. At best, scientific knowledge from publications is provided in tabular formats, which lack semantic context. A more flexible, structured, and semantic representation is needed to make scientific knowledge understandable and processable by both humans and machines. We propose an evolution model of knowledge representation, inspired by the 5-star Linked Open Data (LOD) model, with five stages and defined criteria to guide the stepwise transition from a digital artifact, such as a PDF, to a semantic representation integrated in a knowledge graph (KG). Based on an exemplary workflow implementing the entire model, we developed a hybrid approach, called SciMantify, leveraging tabular formats of scientific knowledge, e.g., results from…
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Taxonomy
TopicsSemantic Web and Ontologies · Advanced Graph Neural Networks · Biomedical Text Mining and Ontologies
