Optimal Reconstruction Codes with Given Reads in Multiple Burst-Substitutions Channels
Wenjun Yu, Yubo Sun, Zixiang Xu, Gennian Ge, Moshe Schwartz

TL;DR
This paper establishes a fundamental trade-off in optimal reconstruction codes over channels with multiple burst substitutions, providing bounds, algorithms, and combinatorial insights for improved error correction and reconstruction.
Contribution
It introduces a new trade-off relation among error correction, reads, and list size, along with sharp bounds and an efficient list-reconstruction algorithm for burst-substitution channels.
Findings
Derived sharp asymptotic bounds on error ball sizes in burst metric.
Improved Gilbert-Varshamov bound for multiple bursts.
Proposed an efficient list-reconstruction algorithm.
Abstract
We study optimal reconstruction codes over the multiple-burst substitution channel. Our main contribution is establishing a trade-off between the error-correction capability of the code, the number of reads used in the reconstruction process, and the decoding list size. We show that over a channel that introduces at most bursts, we can use a length- code capable of correcting errors, with reads, and decoding with a list of size , where . In the process of proving this, we establish sharp asymptotic bounds on the size of error balls in the burst metric. More precisely, we prove a Johnson-type lower bound via Kahn's Theorem on large matchings in hypergraphs, and an upper bound via a novel variant of Kleitman's Theorem under the burst metric, which might be of independent interest. Beyond this main trade-off, we…
Peer Reviews
No public reviews on file for this paper yet. If you reviewed it on a platform where reviews are public (OpenReview, ICLR, NeurIPS, ICML), you can paste yours below so the community can read it here.
Videos
No videos yet. Explain this paper in a talk, walkthrough, or lecture? Add one.
Taxonomy
TopicsDNA and Biological Computing · Advanced Data Storage Technologies · Algorithms and Data Compression
