PCA for Enhanced Cross-Dataset Generalizability in Breast Ultrasound Tumor Segmentation

TL;DR

This study demonstrates that applying PCA preprocessing to ultrasound images enhances the cross-dataset generalizability of tumor segmentation models, leading to significant improvements in recall and Dice scores across diverse datasets.

Contribution

The paper introduces a novel PCA-based preprocessing method that improves the external validity of ultrasound tumor segmentation models across multiple datasets.

Findings

PCA preprocessing improves recall and Dice scores in cross-dataset segmentation.

Using PCA reduces performance decline due to dataset variability by 33%.

PCA enhances model robustness in challenging segmentation cases.

Abstract

In medical image segmentation, limited external validity remains a critical obstacle when models are deployed across unseen datasets, an issue particularly pronounced in the ultrasound image domain. Existing solutions-such as domain adaptation and GAN-based style transfer-while promising, often fall short in the medical domain where datasets are typically small and diverse. This paper presents a novel application of principal component analysis (PCA) to address this limitation. PCA preprocessing reduces noise and emphasizes essential features by retaining approximately 90\% of the dataset variance. We evaluate our approach across six diverse breast tumor ultrasound datasets comprising 3,983 B-mode images and corresponding expert tumor segmentation masks. For each dataset, a corresponding dimensionality reduced PCA-dataset is created and U-Net-based segmentation models are trained on each of the twelve datasets. Each model trained on an original dataset was inferenced on the remaining five out-of-domain original datasets (baseline results), while each model trained on a PCA dataset was inferenced on five out-of-domain PCA datasets. Our experimental results indicate that using PCA reconstructed datasets, instead of original images, improves the model's recall and Dice scores, particularly for model-dataset pairs where baseline performance was lowest, achieving statistically significant gains in recall (0.57 $\pm$ 0.07 vs. 0.70 $\pm$ 0.05, $p = 0.0004$) and Dice scores (0.50 $\pm$ 0.06 vs. 0.58 $\pm$ 0.06, $p = 0.03$). Our method reduced the decline in recall values due to external validation by $33\%$. These findings underscore the potential of PCA reconstruction as a safeguard to mitigate declines in segmentation performance, especially in challenging cases, with implications for enhancing external validity in real-world medical applications.