The BPgWSP test: a Bayesian Weibull Shape Parameter signal detection test for adverse drug reactions

TL;DR

The paper introduces the BPgWSP test, a Bayesian statistical method utilizing Weibull shape parameters for detecting drug-adverse event signals in electronic health records, enhancing pharmacovigilance accuracy.

Contribution

It presents a novel Bayesian Weibull shape parameter test for adverse drug reaction detection, incorporating prior knowledge and optimizing sensitivity and specificity through simulation.

Findings

The test effectively detects drug-AE associations in simulated data.

Optimal tuning of the test improves detection performance.

Application to real data demonstrates practical utility.

Abstract

We develop the Bayesian Power generalized Weibull shape parameter (BPgWSP) test as statistical method for signal detection of possible drug-adverse event associations using electronic health records for pharmacovigilance. The Bayesian approach allows the incorporation of prior knowledge about the likely time of occurrence along time-to-event data. The test is based on the shape parameters of the Power generalized Weibull (PgW) distribution. When both shape parameters are equal to one, the PgW distribution reduces to an exponential distribution, yielding a constant hazard function. This is interpreted as no temporal association between drug and adverse event (AE). The BPgWSP test involves comparing a region of practical equivalence (ROPE) around one reflecting the null hypothesis with estimated credibility intervals (CI) reflecting the posterior means of the shape parameters. The decision to raise a signal is based on the CI+ROPE tests and the selected combination rule for these outcomes. The test development requires a simulation study for tuning of the ROPE and CIs to optimize specificity and sensitivity of the test. Samples are generated under various conditions, including differences in sample size, prevalence of adverse drug reactions (ADRs), and the proportion of AEs. We explore prior assumptions reflecting the belief in the presence or absence of ADRs at different points in the observation period. Various types of ROPE, CIs, and combination rules are assessed, and optimal tuning parameters are identified based on the area under the curve. The tuned BPgWSP test is illustrated in a case study in which the time-dependent correlation between the intake of bisphosphonates and four AEs is investigated.