AskBeacon -- Performing genomic data exchange and analytics with natural language
Anuradha Wickramarachchi, Shakila Tonni, Sonali Majumdar, Sarvnaz, Karimi, Sulev K\~oks, Brendan Hosking, Jordi Rambla, Natalie A. Twine, Yatish, Jain, Denis C. Bauer
TL;DR
AskBeacon integrates large language models with the GA4GH Beacon protocol to facilitate secure, natural language-based querying of genomic data, making data access and analysis more accessible for clinicians and researchers.
Contribution
It introduces a novel approach that combines LLMs with genomic data sharing protocols to enable intuitive, natural language interactions with genomic datasets.
Findings
Enables natural language querying of genomic data
Provides actionable insights from genomic datasets
Facilitates publication-ready analysis
Abstract
Enabling clinicians and researchers to directly interact with global genomic data resources by removing technological barriers is vital for medical genomics. AskBeacon enables Large Language Models to be applied to securely shared cohorts via the GA4GH Beacon protocol. By simply "asking" Beacon, actionable insights can be gained, analyzed and made publication-ready.
Peer Reviews
No public reviews on file for this paper yet. If you reviewed it on a platform where reviews are public (OpenReview, ICLR, NeurIPS, ICML), you can paste yours below so the community can read it here.
Videos
No videos yet. Explain this paper in a talk, walkthrough, or lecture? Add one.
Taxonomy
TopicsBiomedical Text Mining and Ontologies · Gene expression and cancer classification