Controlling sharpness, SNR and SAR for 3D FSE at 7T by end-to-end learning

TL;DR

This paper introduces an end-to-end learning approach to optimize variable flip angle schemes for 3D FSE MRI at 7T, balancing image sharpness, SNR, and SAR constraints, resulting in improved image quality and tissue visibility.

Contribution

It presents a novel end-to-end learning framework for non-heuristic VFA optimization considering PSF, SNR, and SAR constraints in 3D FSE sequences at 7T.

Findings

PSF-optimized VFAs reduce image blurring by 50% compared to standard VFAs.

SNR-optimized VFAs significantly improve SNR in white and gray matter regions.

The method enables flexible trade-offs between PSF and SNR in 3D FSE MRI at 7T.

Abstract

Purpose: To non-heuristically identify dedicated variable flip angle (VFA) schemes optimized for the point-spread function (PSF) and signal-to-noise ratio (SNR) of multiple tissues in 3D FSE sequences with very long echo trains at 7T. Methods: The proposed optimization considers predefined SAR constraints and target contrast using an end-to-end learning framework. The cost function integrates components for contrast fidelity (SNR) and a penalty term to minimize image blurring (PSF) for multiple tissues. By adjusting the weights of PSF/SNR cost-function components, PSF- and SNR-optimized VFAs were derived and tested in vivo using both the open-source Pulseq standard on two volunteers as well as vendor protocols on a 7T MRI system with parallel transmit extension on three volunteers. Results: PSF-optimized VFAs resulted in significantly reduced image blurring compared to standard VFAs for T2w while maintaining contrast fidelity. Small white and gray matter structures, as well as blood vessels, are more visible with PSF-optimized VFAs. Quantitative analysis shows that the optimized VFA yields 50% less deviation from a sinc-like reference PSF than the standard VFA. The SNR-optimized VFAs yielded images with significantly improved SNR in a white and gray matter region relative to standard (81.2\pm18.4 vs. 41.2\pm11.5, respectively) as trade-off for elevated image blurring. Conclusion: This study demonstrates the potential of end-to-end learning frameworks to optimize VFA schemes in very long echo trains for 3D FSE acquisition at 7T in terms of PSF and SNR. It paves the way for fast and flexible adjustment of the trade-off between PSF and SNR for 3D FSE.