Robust Non-adaptive Group Testing under Errors in Group Membership Specifications

TL;DR

This paper introduces the DRLT method, a robust group testing approach that effectively identifies defective samples and erroneous group memberships despite specification errors, extending Lasso bias mitigation techniques.

Contribution

The paper proposes the DRLT method, a novel robust group testing technique that handles group membership errors and provides theoretical error bounds, improving over existing methods.

Findings

DRLT outperforms baseline methods in identifying defective samples.

Theoretical bounds on reconstruction error are established.

Numerical results demonstrate the effectiveness of DRLT in practical scenarios.

Abstract

Given $p$ samples, each of which may or may not be defective, group testing (GT) aims to determine their defect status by performing tests on $n < p$ `groups', where a group is formed by mixing a subset of the $p$ samples. Assuming that the number of defective samples is very small compared to $p$, GT algorithms have provided excellent recovery of the status of all $p$ samples with even a small number of groups. Most existing methods, however, assume that the group memberships are accurately specified. This assumption may not always be true in all applications, due to various resource constraints. Such errors could occur, eg, when a technician, preparing the groups in a laboratory, unknowingly mixes together an incorrect subset of samples as compared to what was specified. We develop a new GT method, the Debiased Robust Lasso Test Method (DRLT), that handles such group membership specification errors. The proposed DRLT method is based on an approach to debias, or reduce the inherent bias in, estimates produced by Lasso, a popular and effective sparse regression technique. We also provide theoretical upper bounds on the reconstruction error produced by our estimator. Our approach is then combined with two carefully designed hypothesis tests respectively for (i) the identification of defective samples in the presence of errors in group membership specifications, and (ii) the identification of groups with erroneous membership specifications. The DRLT approach extends the literature on bias mitigation of statistical estimators such as the LASSO, to handle the important case when some of the measurements contain outliers, due to factors such as group membership specification errors. We present numerical results which show that our approach outperforms several baselines and robust regression techniques for identification of defective samples as well as erroneously specified groups.