Decomposing heterogeneous dynamical systems with graph neural networks
C\'edric Allier, Magdalena C. Schneider, Michael Innerberger, Larissa Heinrich, John A. Bogovic, Stephan Saalfeld

TL;DR
This paper introduces a method using graph neural networks to learn and decompose complex heterogeneous dynamical systems, enabling better understanding and modeling of their underlying rules from observable data.
Contribution
It presents a novel approach to jointly learn interaction rules and heterogeneity in complex systems using graph neural networks, facilitating their decomposition and analysis.
Findings
Successfully applied to simulated particle interactions, vector fields, and signaling networks.
Able to infer underlying governing equations from observable dynamics.
Demonstrates potential as a general tool for analyzing complex natural systems.
Abstract
Natural physical, chemical, and biological dynamical systems are often complex, with heterogeneous components interacting in diverse ways. We show how simple graph neural networks can be designed to jointly learn the interaction rules and the latent heterogeneity from observable dynamics. The learned latent heterogeneity and dynamics can be used to virtually decompose the complex system which is necessary to infer and parameterize the underlying governing equations. We tested the approach with simulation experiments of interacting moving particles, vector fields, and signaling networks. While our current aim is to better understand and validate the approach with simulated data, we anticipate it to become a generally applicable tool to uncover the governing rules underlying complex dynamics observed in nature.
Peer Reviews
Decision·Submitted to ICLR 2025
1. The paper is in general easy to follow and with clear writing flow. The problem is well-motivated, by using GNN to learn system dynamics over time and in the meanwhile, uncover the underlying latent properties in an interpretable way that facilitates further analysis. 2. The evaluation of dynamical systems in the experiment sections are extensive, though adding some baselines for comparison would be better.
1. There is no related work section. Some works are discussed in the introduction part, but there are many existing neural simulators that use GNN to rollout trajectories of multi-agent dynamical systems [1,2,3,4]. Discussion about existing work and comparison in the experiment section are helpful to provide a comprehensive analysis. 2. As mentioned above, for rollout MSE across different datasets, it is suggested to compare against representative baselines. Also the run time comparison can be
- The figures are well-presented. - The experiment details are clear.
- First of all, what does heterogeneity mean in this context? Meaning that the particles are of different types? The closest thing I can find to a definition is "The latent heterogeneity of the particles is encoded by a two-dimensional learnable embedding $a_i$ that is part of the node features." But why two? - The simulation of dynamic systems has been routinely done by GNNs, most notably Sanchez-Gonzalez et al., 2020, as cited in the paper. The only difference seems to be that they do not cons
This model can be applied to various complex realistic systems to reveal the underlying structure and dynamics.
1. The presentation is poor. It is hard to track simulations they did for the model. People need to check figure, table, video and supplementary figure to understand what they have done without any hint or explanation. 2. The interpretations are lack to explain their results. Only showing several latent representations are not enough to convince or help understand the model's strength.
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Taxonomy
TopicsNeural Networks and Applications
