Thermodynamic Space of Chemical Reaction Networks
Shiling Liang, Paolo De Los Rios, Daniel Maria Busiello

TL;DR
This paper introduces a theoretical framework called the 'thermodynamic space' of chemical reaction networks (CRNs), which characterizes the range of possible steady states constrained by thermodynamics, aiding understanding and design of out-of-equilibrium systems.
Contribution
The authors derive an analytical description of the thermodynamic space of CRNs, linking global thermodynamic properties to local non-equilibrium behaviors, a novel approach for analyzing complex chemical systems.
Findings
Boundaries of stationary concentrations under energy constraints
Relation between total non-equilibrium driving and local quantities
Application to paradigmatic examples showing complex behavior emergence
Abstract
Living systems operate out of equilibrium, continuously consuming energy to sustain organised, functional states. Their emergent behaviour usually relies on a set of interconnected chemical reaction networks (CRNs) driven by external fluxes that keep some species at fixed concentrations. Hence, uncovering the principles governing the functioning of these CRNs is crucial to understand how living systems generate and regulate complexity. While kinetics plays a key role in shaping detailed dynamical phenomena, the range of operations of a CRN is fundamentally constrained by thermodynamics. Here, we introduce and analytically derive the "thermodynamic space" of a CRN, i.e., the range of accessible stationary concentrations that can be realized under a given energetic budget. We establish analogous bounds for reaction affinities, shedding light on how global thermodynamic properties, such as…
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Taxonomy
TopicsGene Regulatory Network Analysis · Computational Drug Discovery Methods · Microbial Metabolic Engineering and Bioproduction
