Characterizing the Interpretability of Attention Maps in Digital Pathology

TL;DR

This paper proposes a standardized framework to evaluate the interpretability of attention maps in digital pathology models, assessing their reliability in highlighting relevant features amidst confounders and aiding biomarker discovery.

Contribution

It introduces a novel evaluation framework using artificial confounders and interpretability metrics to assess attention map robustness in digital pathology models.

Findings

Attention maps generally highlight relevant regions

Model robustness is affected by confounder type and quantity

Framework can aid in biomarker discovery

Abstract

Interpreting machine learning model decisions is crucial for high-risk applications like healthcare. In digital pathology, large whole slide images (WSIs) are decomposed into smaller tiles and tile-derived features are processed by attention-based multiple instance learning (ABMIL) models to predict WSI-level labels. These networks generate tile-specific attention weights, which can be visualized as attention maps for interpretability. However, a standardized evaluation framework for these maps is lacking, questioning their reliability and ability to detect spurious correlations that can mislead models. We herein propose a framework to assess the ability of attention networks to attend to relevant features in digital pathology by creating artificial model confounders and using dedicated interpretability metrics. Models are trained and evaluated on data with tile modifications correlated with WSI labels, enabling the analysis of model sensitivity to artificial confounders and the accuracy of attention maps in highlighting them. Confounders are introduced either through synthetic tile modifications or through tile ablations based on their specific image-based features, with the latter being used to assess more clinically relevant scenarios. We also analyze the impact of varying confounder quantities at both the tile and WSI levels. Our results show that ABMIL models perform as desired within our framework. While attention maps generally highlight relevant regions, their robustness is affected by the type and number of confounders. Our versatile framework has the potential to be used in the evaluation of various methods and the exploration of image-based features driving model predictions, which could aid in biomarker discovery.