Molecule Graph Networks with Many-body Equivariant Interactions
Zetian Mao, Chuan-Shen Hu, Jiawen Li, Chen Liang, Diptesh Das, Masato Sumita, Kelin Xia, Koji Tsuda

TL;DR
This paper introduces ENINet, a novel neural network that explicitly incorporates equivariant many-body interactions to better capture geometric symmetries, leading to improved accuracy in molecular property predictions.
Contribution
The paper develops a new N-body equivariant network architecture that explicitly models many-body interactions, enhancing the expressivity of molecular graph neural networks.
Findings
Enhanced prediction accuracy for quantum chemical properties
Mathematical proof of the importance of many-body interactions
Generalization of N-body equivariant formulations
Abstract
Message passing neural networks have demonstrated significant efficacy in predicting molecular interactions. Introducing equivariant vectorial representations augments expressivity by capturing geometric data symmetries, thereby improving model accuracy. However, two-body bond vectors in opposition may cancel each other out during message passing, leading to the loss of directional information on their shared node. In this study, we develop Equivariant N-body Interaction Networks (ENINet) that explicitly integrates l = 1 equivariant many-body interactions to enhance directional symmetric information in the message passing scheme. We provided a mathematical analysis demonstrating the necessity of incorporating many-body equivariant interactions and generalized the formulation to -body interactions. Experiments indicate that integrating many-body equivariant representations enhances…
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Taxonomy
TopicsComputational Drug Discovery Methods · Protein Structure and Dynamics · Advanced Thermodynamics and Statistical Mechanics
