The Associated Volume sampling algorithm as an alternative method for the calculation of ionisation cluster size distributions in computational nanodosimetry
Jo\~ao F. Canhoto, Yann Perrot, Reinhard Schulte, Ana Belchior, Carmen Villagrasa

TL;DR
This study compares the Associated Volume (AV) algorithm to the Uniform Sampling (US) method for calculating ionisation cluster size distributions in nanodosimetry, finding AV-Overlap offers similar accuracy with significantly improved efficiency.
Contribution
The paper introduces and evaluates the AV-Overlap and AV-No Overlap algorithms as efficient alternatives to US for conditional ICSD calculations in nanodosimetry.
Findings
AV-Overlap achieves similar accuracy to US with less than 5% deviation.
Both AV algorithms are 10-100 times faster than US.
AV-Overlap is recommended for efficient nanodosimetric calculations.
Abstract
In computational nanodosimetry, Monte Carlo Track Structure (MCTS) simulations are employed to calculate ionisation cluster size distributions (ICSDs), which are crucial for characterising mixed radiation fields at the nanoscale. The Uniform Sampling (US) algorithm, commonly used for this purpose, is inefficient when evaluating ICSDs conditioned on clusters exceeding a given size threshold. This study investigates a more efficient alternative - the Associated Volume (AV) algorithm - against the US approach for computing conditional ICSDs () from proton tracks simulated with Geant4-DNA. Two configurations of the AV algorithm were evaluated: the standard AV-Overlap, allowing sensitive volumes to overlap (with a 1/ correction), and the novel AV-No Overlap, which prevents overlap. We compared the conditional ICSDs, mean cluster size (), complementary cumulative…
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Taxonomy
TopicsRNA and protein synthesis mechanisms · DNA and Nucleic Acid Chemistry · Advanced biosensing and bioanalysis techniques
