GCondenser: Benchmarking Graph Condensation
Yilun Liu, Ruihong Qiu, Zi Huang

TL;DR
GCondenser introduces a comprehensive benchmark for evaluating graph condensation methods, enabling standardized comparison and analysis of their effectiveness on large-scale graphs for improved training efficiency.
Contribution
It provides the first large-scale, standardized benchmarking framework for graph condensation methods, facilitating fair evaluation and comparison across different approaches.
Findings
Existing GC methods vary in effectiveness
Benchmark reveals strengths and weaknesses of current approaches
Open-source platform promotes further research
Abstract
Large-scale graphs are valuable for graph representation learning, yet the abundant data in these graphs hinders the efficiency of the training process. Graph condensation (GC) alleviates this issue by compressing the large graph into a significantly smaller one that still supports effective model training. Although recent research has introduced various approaches to improve the effectiveness of the condensed graph, comprehensive and practical evaluations across different GC methods are neglected. This paper proposes the first large-scale graph condensation benchmark, GCondenser, to holistically evaluate and compare mainstream GC methods. GCondenser includes a standardised GC paradigm, consisting of condensation, validation, and evaluation procedures, as well as enabling extensions to new GC methods and datasets. With GCondenser, a comprehensive performance study is conducted,…
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Taxonomy
TopicsBioinformatics and Genomic Networks · Advanced Biosensing Techniques and Applications · Gene expression and cancer classification
