Sequence saturation
Anand, Jesse Geneson, Suchir Kaustav, and Shen-Fu Tsai

TL;DR
This paper introduces and analyzes saturation and semisaturation functions of sequences, providing bounds and characterizations for these functions across various types of sequences, including alternating and two-letter sequences.
Contribution
It defines new saturation concepts for sequences, proves fundamental properties, and determines bounds for these functions, especially for alternating and two-letter sequences.
Findings
Semisaturation function is always O(1) or Θ(n).
Saturation function for any sequence is either at least n or bounded by a constant.
For two-letter sequences, saturation function is either O(1) or Θ(n).
Abstract
In this paper, we introduce saturation and semisaturation functions of sequences, and we prove a number of fundamental results about these functions. Given a forbidden sequence with distinct letters, we say that a sequence on a given alphabet is -saturated if is -sparse, -free, and adding any letter from the alphabet to an arbitrary position in violates -sparsity or induces a copy of . We say that is -semisaturated if is -sparse and adding any letter from the alphabet to violates -sparsity or induces a new copy of . Let the saturation function denote the minimum possible length of a -saturated sequence on an alphabet of size , and let the semisaturation function denote the minimum possible length of a -semisaturated sequence on an alphabet of size . For…
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Taxonomy
TopicsFractal and DNA sequence analysis · Spectroscopy Techniques in Biomedical and Chemical Research · Gene expression and cancer classification
