Crystalformer: Infinitely Connected Attention for Periodic Structure Encoding
Tatsunori Taniai, Ryo Igarashi, Yuta Suzuki, Naoya Chiba, Kotaro, Saito, Yoshitaka Ushiku, Kanta Ono

TL;DR
Crystalformer introduces a Transformer-based encoder for periodic crystal structures that efficiently handles infinite atomic arrangements, outperforming existing models with fewer parameters in predicting material properties.
Contribution
The paper presents a novel Transformer architecture, Crystalformer, capable of modeling infinite periodic structures with reduced parameters and improved accuracy over prior methods.
Findings
Outperforms state-of-the-art property prediction models
Uses only 29.4% of parameters compared to existing Transformer models
Effectively models infinite periodic atomic arrangements
Abstract
Predicting physical properties of materials from their crystal structures is a fundamental problem in materials science. In peripheral areas such as the prediction of molecular properties, fully connected attention networks have been shown to be successful. However, unlike these finite atom arrangements, crystal structures are infinitely repeating, periodic arrangements of atoms, whose fully connected attention results in infinitely connected attention. In this work, we show that this infinitely connected attention can lead to a computationally tractable formulation, interpreted as neural potential summation, that performs infinite interatomic potential summations in a deeply learned feature space. We then propose a simple yet effective Transformer-based encoder architecture for crystal structures called Crystalformer. Compared to an existing Transformer-based model, the proposed model…
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Taxonomy
TopicsNeural Networks and Applications
MethodsAttention Is All You Need · Linear Layer · Absolute Position Encodings · Softmax · Layer Normalization · Multi-Head Attention · Dropout · Residual Connection · Position-Wise Feed-Forward Layer · Byte Pair Encoding
