Rapid state-recrossing kinetics in non-Markovian systems
Qingyuan Zhou, Roland R. Netz, and Benjamin A. Dalton

TL;DR
This paper investigates how non-Markovian memory effects influence reaction times in barrier-crossing processes, emphasizing the importance of analyzing full first-passage distributions rather than just mean times.
Contribution
It introduces a systematic comparison of two numerical methods for evaluating MFPTs in non-Markovian systems and highlights the significance of considering full first-passage distributions.
Findings
Memory effects cause rapid state-recrossing, affecting MFPTs.
Methods that incorporate all first-passages provide more accurate reaction kinetics.
Full first-passage distributions are essential for analyzing non-Markovian reaction times.
Abstract
The mean first-passage time (MFPT) is one standard measure for the reaction time in thermally activated barrier-crossing processes. While the relationship between MFPTs and phenomenological rate coefficients is known for systems that satisfy Markovian dynamics, it is not clear how to interpret MFPTs for experimental and simulation time-series data generated by non-Markovian systems. Here, we simulate a one-dimensional generalized Langevin equation (GLE) in a bistable potential and compare two related numerical methods for evaluating MFPTs: one that only incorporates information about first arrivals between subsequent states and is equivalent to calculating the waiting time, or dwell time, and one that incorporates information about all first-passages associated with a given barrier-crossing event and is therefore typically employed to enhance numerical sampling. In the Markovian limit,…
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Taxonomy
TopicsNeural dynamics and brain function · Advanced Thermodynamics and Statistical Mechanics
