Understanding Heterophily for Graph Neural Networks

TL;DR

This paper provides a theoretical analysis of how heterophily patterns affect Graph Neural Networks, revealing key factors like neighborhood distribution distance and node degree that influence GNN performance.

Contribution

It introduces Heterophilous Stochastic Block Models to analyze heterophily effects and offers new insights into the impact of topology and multiple convolution operations on GNN separability.

Findings

Separable gains depend on neighborhood distribution distance and node degree.

Topological noise degrades separability by reducing node degree.

Multiple GC operations can maintain separability as neighborhood distance is normalized.

Abstract

Graphs with heterophily have been regarded as challenging scenarios for Graph Neural Networks (GNNs), where nodes are connected with dissimilar neighbors through various patterns. In this paper, we present theoretical understandings of the impacts of different heterophily patterns for GNNs by incorporating the graph convolution (GC) operations into fully connected networks via the proposed Heterophilous Stochastic Block Models (HSBM), a general random graph model that can accommodate diverse heterophily patterns. Firstly, we show that by applying a GC operation, the separability gains are determined by two factors, i.e., the Euclidean distance of the neighborhood distributions and $\sqrt{\mathbb{E}\left[\operatorname{deg}\right]}$, where $\mathbb{E}\left[\operatorname{deg}\right]$ is the averaged node degree. It reveals that the impact of heterophily on classification needs to be evaluated alongside the averaged node degree. Secondly, we show that the topological noise has a detrimental impact on separability, which is equivalent to degrading $\mathbb{E}\left[\operatorname{deg}\right]$. Finally, when applying multiple GC operations, we show that the separability gains are determined by the normalized distance of the $l$-powered neighborhood distributions. It indicates that the nodes still possess separability as $l$ goes to infinity in a wide range of regimes. Extensive experiments on both synthetic and real-world data verify the effectiveness of our theory.