Metadata-Conditioned Generative Models to Synthesize Anatomically-Plausible 3D Brain MRIs

TL;DR

This paper introduces BrainSynth, a generative model for creating metadata-conditioned 3D brain MRIs with high visual quality and anatomical plausibility, aiding neuroimaging research.

Contribution

The paper presents BrainSynth, a novel generative model that synthesizes anatomically plausible, metadata-conditioned 3D brain MRIs and evaluates their macrostructural accuracy.

Findings

Over half of the brain regions in synthetic MRIs are anatomically accurate.

Anatomical plausibility varies with cortical region complexity.

Synthetic MRIs improve CNN training for aging studies.

Abstract

Generative AI models hold great potential in creating synthetic brain MRIs that advance neuroimaging studies by, for example, enriching data diversity. However, the mainstay of AI research only focuses on optimizing the visual quality (such as signal-to-noise ratio) of the synthetic MRIs while lacking insights into their relevance to neuroscience. To gain these insights with respect to T1-weighted MRIs, we first propose a new generative model, BrainSynth, to synthesize metadata-conditioned (e.g., age- and sex-specific) MRIs that achieve state-of-the-art visual quality. We then extend our evaluation with a novel procedure to quantify anatomical plausibility, i.e., how well the synthetic MRIs capture macrostructural properties of brain regions, and how accurately they encode the effects of age and sex. Results indicate that more than half of the brain regions in our synthetic MRIs are anatomically accurate, i.e., with a small effect size between real and synthetic MRIs. Moreover, the anatomical plausibility varies across cortical regions according to their geometric complexity. As is, our synthetic MRIs can significantly improve the training of a Convolutional Neural Network to identify accelerated aging effects in an independent study. These results highlight the opportunities of using generative AI to aid neuroimaging research and point to areas for further improvement.