Transition path theory for diffusive search with stochastic resetting
Paul C Bressloff

TL;DR
This paper extends transition path theory to analyze diffusive search processes with stochastic resetting, deriving formulas for reaction rates and identifying optimal resetting rates that maximize resource delivery.
Contribution
It introduces a novel application of TPT to diffusive search with resetting, addressing non-equilibrium stationary states and flux calculations across dividing surfaces.
Findings
Derived a general expression for the resource accumulation rate $k_{AB}$.
Showed that $k_{AB}$ is independent of the dividing surface choice.
Identified an optimal resetting rate that maximizes $k_{AB}$ in a finite interval.
Abstract
Many chemical reactions can be formulated in terms of particle diffusion in a complex energy landscape. Transition path theory (TPT) is a theoretical framework for describing the direct (reaction) pathways from reactant to product states within this energy landscape, and calculating the effective reaction rate. It is now the standard method for analyzing rare events between long lived states. In this paper, we consider a completely different application of TPT, namely, a dual-aspect diffusive search process in which a particle alternates between collecting cargo from a source domain and then delivering it to a target domain . The rate of resource accumulation at the target, , is determined by the statistics of direct (reactive or transport) paths from A to B. Rather than considering diffusion in a complex energy landscape, we focus on pure diffusion with stochastic…
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Taxonomy
TopicsDiffusion and Search Dynamics · DNA and Nucleic Acid Chemistry · Advanced biosensing and bioanalysis techniques
