Symmetry-specific characterization of bond orientation order in DNA-assembled nanoparticle lattices
Jack A. Logan, Aaron Michelson, Ajith Pattammattel, Hanfei Yan, Oleg, Gang, Alexei V. Tkachenko

TL;DR
This paper introduces Symmetry-specific Bond Order Parameters (SymBOPs) for detailed analysis of local bond orientation order in DNA-assembled nanoparticle lattices, enhancing detection of domains and defects.
Contribution
It extends the SymBOP method to isotropic particles and unorientated systems, demonstrating its effectiveness in experimental nanoparticle lattice analysis.
Findings
Highly sensitive detection of crystalline domains and orientations
Identification of topological defects like dislocations
Distinguishing sublattices within complex structures
Abstract
Bond-orientational order in DNA-assembled nanoparticle lattices is explored with the help of recently introduced Symmetry-specific Bond Order Parameters (SymBOPs). This approach provides a more sensitive analysis of local order than traditional scalar Bond Order Parameters, facilitating the identification of coherent domains at the single bond level. The present study expands the method initially developed for assemblies of anisotropic particles to the isotropic ones or cases where particle orientation information is unavailable. The SymBOP analysis was applied to experiments on DNA-frame-based assembly of nanoparticle lattices. It proved highly sensitive in identifying coherent crystalline domains with different orientations, as well as detecting topological defects, such as dislocations. Furthermore, the analysis distinguishes individual sublattices within a single crystalline domain,…
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Taxonomy
TopicsAdvanced biosensing and bioanalysis techniques · DNA and Nucleic Acid Chemistry · RNA Interference and Gene Delivery
