Explicit Construction of q-ary 2-deletion Correcting Codes with Low Redundancy
Shu Liu, Ivan Tjuawinata, Chaoping Xing

TL;DR
This paper presents an explicit construction of q-ary 2-deletion correcting codes with lower redundancy than existing codes, using binary code transformations and leveraging Guruswami and Hastad's binary 2-deletion code.
Contribution
It introduces a new explicit construction of q-ary 2-deletion codes with minimal redundancy and efficient list-decodability, improving upon prior methods.
Findings
Redundancy of 5 log(n)+10 log(log(n)) + 3 log(q)+O(1) achieved
Construction is efficiently encodable and list-decodable
Redundancy is smaller than existing q-ary 2-deletion codes
Abstract
We consider the problem of efficient construction of q-ary 2-deletion correcting codes with low redundancy. We show that our construction requires less redundancy than any existing efficiently encodable q-ary 2-deletion correcting codes. Precisely speaking, we present an explicit construction of a q-ary 2-deletion correcting code with redundancy 5 log(n)+10log(log(n)) + 3 log(q)+O(1). Using a minor modification to the original construction, we obtain an efficiently encodable q-ary 2-deletion code that is efficiently list-decodable. Similarly, we show that our construction of list-decodable code requires a smaller redundancy compared to any existing list-decodable codes. To obtain our sketches, we transform a q-ary codeword to a binary string which can then be used as an input to the underlying base binary sketch. This is then complemented with additional q-ary sketches that the…
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Taxonomy
TopicsAdvanced biosensing and bioanalysis techniques · DNA and Biological Computing · Molecular Biology Techniques and Applications
