Designing translational animal experiments by Bayesian MAP approaches

TL;DR

This paper introduces Bayesian MAP approaches for designing translational animal experiments, leveraging prior data to improve reproducibility and translation to humans, compared to traditional frequentist methods.

Contribution

It presents a systematic framework for designing animal experiments using Bayesian meta-analytic predictive models, highlighting practical challenges and advantages over classical methods.

Findings

Bayesian MAP approaches incorporate prior data effectively.

Compared to frequentist methods, MAP improves experiment design in translational research.

Practical challenges include constructing priors and sample size determination.

Abstract

The planning and conduct of animal experiments in the European Union is subject to strict legal conditions. Still, many preclinical animal experiments are only poorly designed. As a consequence, discoveries that are made in one animal experiment, cannot be reproduced in another animal experiment or discoveries in translational animal research fail to be translated to humans. When designing new experiments in a classical frequentist framework, the sample size for the new experiment is chosen with the goal to achieve at least a certain statistical power, given a statistical test for a null hypothesis, a significance threshold and a minimally relevant effect size. In a Bayesian framework, inference is made by a combination of both the information from newly observed data and also by a prior distribution, that represents a priori information on the parameters. In translational animal experiments, a priori information is present in previously conducted experiments to the same outcome in similar animals. The prior information can be incorporated in a systematic way in the design and analysis of a new animal experiment by summarizing the historical data in a (Bayesian) meta-analysis model and using the meta-analysis model to make predictions for the data in the new experiment. This is called meta-analytic predictive (MAP) approach. In this work, concepts of how to design translational animal experiments by MAP approaches are introduced and compared to classical frequentist power-oriented sample size planning. Current chances and challenges, that exist in the practical application of these approaches in translational animal research, are discussed. Special emphasis is put on the construction of prior distributions and sample size calculation by design analysis. The considerations are motivated by a real world translational research example.