Design of Hamiltonian Monte Carlo for perfect simulation of general continuous distributions
George M. Leigh, Amanda R. Northrop (Department of Agriculture and, Fisheries, Queensland, Australia)

TL;DR
This paper introduces a novel Hamiltonian Monte Carlo (HMC) algorithm that achieves perfect sampling for continuous distributions, enabling precise convergence diagnostics and efficient sampling in high-dimensional settings.
Contribution
The authors develop HMC algorithms based on NUTS and unbiased sampling techniques that produce perfect samples, separating convergence error from experimental error.
Findings
Effective sampling of high-dimensional distributions demonstrated.
Significant reduction in derivative evaluations for perfect samples.
Enhanced convergence diagnostics through separation of errors.
Abstract
Hamiltonian Monte Carlo (HMC) is an efficient method of simulating smooth distributions and has motivated the widely used No-U-turn Sampler (NUTS) and software Stan. We build on NUTS and the technique of "unbiased sampling" to design HMC algorithms that produce perfect simulation of general continuous distributions that are amenable to HMC. Our methods enable separation of Markov chain Monte Carlo convergence error from experimental error, and thereby provide much more powerful MCMC convergence diagnostics than current state-of-the-art summary statistics which confound these two errors. Objective comparison of different MCMC algorithms is provided by the number of derivative evaluations per perfect sample point. We demonstrate the methodology with applications to normal, and normal mixture distributions up to 100 dimensions, and a 12-dimensional Bayesian Lasso regression. HMC runs…
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Taxonomy
TopicsMarkov Chains and Monte Carlo Methods · Gaussian Processes and Bayesian Inference · Mass Spectrometry Techniques and Applications
