Every Bit Counts: A New Version of Non-binary VT Codes with More Efficient Encoder
Tuan Thanh Nguyen, Kui Cai, and Paul H. Siegel

TL;DR
This paper introduces a new version of non-binary VT codes with more efficient linear-time encoding algorithms that significantly reduce redundancy while correcting single insertions or deletions over q-ary alphabets.
Contribution
It presents the first linear-time encoding algorithms for non-binary VT codes with near-optimal redundancy, improving upon previous methods by reducing redundant symbols.
Findings
Linear-time encoding algorithms for non-binary VT codes
Reduces redundancy compared to previous encoders
Achieves near-optimal redundancy bounds
Abstract
In this work, we present a new version of non-binary VT codes that are capable of correcting a single deletion or single insertion. Moreover, we provide the first known linear time algorithms that encode user messages into these codes of length n over the -ary alphabet for with at most redundant symbols, while the optimal redundancy required is at least symbols. Our designed encoder reduces the redundancy of the best-known encoder of Tenengolts (1984) by at least redundant symbols, or equivalently redundant bits.
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Taxonomy
TopicsCoding theory and cryptography · DNA and Biological Computing · Advanced biosensing and bioanalysis techniques
