Resolving Prime Modules: The Structure of Pseudo-cographs and Galled-Tree Explainable Graphs
Marc Hellmuth, Guillaume E. Scholz

TL;DR
This paper characterizes GaTEx graphs, a generalization of cographs, using forbidden subgraphs, and demonstrates their relation to various graph classes, providing linear-time algorithms for key problems.
Contribution
It introduces a new characterization of GaTEx graphs via forbidden subgraphs and links them to many known graph classes, enabling efficient algorithms.
Findings
GaTEx graphs characterized by 25 forbidden induced subgraphs
GaTEx graphs are related to many well-known graph classes
Linear-time algorithms for NP-hard problems on GaTEx graphs
Abstract
The modular decomposition of a graph is a natural construction to capture key features of in terms of a labeled tree whose vertices are labeled as "series" (), "parallel" () or "prime". However, full information of is provided by its modular decomposition tree only, if is a cograph, i.e., does not contain prime modules. In this case, explains , i.e., if and only if the lowest common ancestor of and has label "". Pseudo-cographs, or, more general, GaTEx graphs are graphs that can be explained by labeled galled-trees, i.e., labeled networks that are obtained from the modular decomposition tree of by replacing the prime vertices in by simple labeled cycles. GaTEx graphs can be recognized and labeled galled-trees that explain these graphs can be constructed in…
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Taxonomy
TopicsComputational Drug Discovery Methods · Topological and Geometric Data Analysis
