Non-binary Two-Deletion Correcting Codes and Burst-Deletion Correcting Codes
Wentu Song, Kui Cai

TL;DR
This paper introduces new systematic q-ary two-deletion and burst-deletion correcting codes with improved redundancy and near-linear encoding complexity, advancing error correction capabilities for sequence transmission.
Contribution
The paper presents novel constructions of systematic q-ary two-deletion and burst-deletion correcting codes with reduced redundancy and efficient encoding algorithms.
Findings
Redundancy for two-deletion codes is $5 ext{log} n + O( ext{log} q ext{log} ext{log} n)$.
Binary burst-deletion codes achieve redundancy $ ext{log} n + 9 ext{log} ext{log} n + ext{constant}$, improving previous results.
q-ary burst-deletion codes have redundancy $ ext{log} n + (8 ext{log} q + 9) ext{log} ext{log} n + o( ext{log} q ext{log} ext{log} n)$.
Abstract
In this paper, we construct systematic -ary two-deletion correcting codes and burst-deletion correcting codes, where is an even integer. For two-deletion codes, our construction has redundancy and has encoding complexity near-linear in , where is the length of the message sequences. For burst-deletion codes, we first present a construction of binary codes with redundancy bits is a constant that depends only on and capable of correcting a burst of at most deletions, which improves the Lenz-Polyanskii Construction (ISIT 2020). Then we give a construction of -ary codes with redundancy bits and capable of correcting a burst of at most deletions.
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Taxonomy
TopicsDNA and Biological Computing · Error Correcting Code Techniques · Advanced biosensing and bioanalysis techniques
