Understanding Linchpin Variables in Markov Chain Monte Carlo
Dootika Vats, Felipe Acosta, Mark L. Huber, Galin L. Jones

TL;DR
This paper explores the use of linchpin variables in Markov Chain Monte Carlo methods, highlighting their historical importance, recent resurgence, and discussing their derivation, benefits, limitations, and applications.
Contribution
It provides a clear derivation of linchpin variable methods in MCMC, discusses their advantages and limitations, and reviews recent research examples.
Findings
Linchpin variables can enhance MCMC sampling efficiency.
The method's validity and limitations are systematically analyzed.
Examples demonstrate practical applications in research literature.
Abstract
An introduction to the use of linchpin variables in Markov chain Monte Carlo (MCMC) is provided. Before the widespread adoption of MCMC methods, conditional sampling using linchpin variables was essentially the only practical approach for simulating from multivariate distributions. With the advent of MCMC, linchpin variables were largely ignored. However, there has been a resurgence of interest in using them in conjunction with MCMC methods and there are good reasons for doing so. A simple derivation of the method is provided, its validity, benefits, and limitations are discussed, and some examples in the research literature are presented.
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Taxonomy
TopicsMarkov Chains and Monte Carlo Methods · Bayesian Methods and Mixture Models · Protein Structure and Dynamics
