Synchronization and random attractors for reaction jump processes
Maximilian Engel, Guillermo Olic\'on-M\'endez, Nathalie Unger and, Stefanie Winkelmann

TL;DR
This paper investigates how common noise induces a time-shifted synchronization in reaction jump processes, analyzing the conditions for synchronization and characterizing the structure of their random attractors.
Contribution
It introduces a framework for analyzing synchronization in reaction jump processes and characterizes the structure of their random attractors, including for birth-death processes.
Findings
Partial time-shifted synchronization occurs after a waiting time
Synchronization depends on initial states
Structure of the random attractor is characterized
Abstract
This work explores a synchronization-like phenomenon induced by common noise for continuous-time Markov jump processes given by chemical reaction networks. A corresponding random dynamical system is formulated in a two-step procedure, at first for the states of the embedded discrete-time Markov chain and then for the augmented Markov chain including also random jump times. We uncover a time-shifted synchronization in the sense that -- after some initial waiting time -- one trajectory exactly replicates another one with a certain time delay. Whether or not such a synchronization behaviour occurs depends on the combination of the initial states. We prove this partial time-shifted synchronization for the special setting of a birth-death process by analyzing the corresponding two-point motion of the embedded Markov chain and determine the structure of the associated random attractor. In…
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Taxonomy
TopicsGene Regulatory Network Analysis · Nonlinear Dynamics and Pattern Formation · Cellular Automata and Applications
