Discovering Dynamic Functional Brain Networks via Spatial and Channel-wise Attention

TL;DR

This paper introduces SCAAE, a novel deep learning model using spatial and channel-wise attention to dynamically discover functional brain networks from fMRI data without relying on sliding windows or linear assumptions.

Contribution

The paper presents a new attention-based autoencoder that effectively captures dynamic FBNs, overcoming limitations of traditional methods and enabling automatic, non-linear, and spatially overlapping network detection.

Findings

Successfully recovered dynamic FBNs at each time step.

Outperformed traditional correlation-based methods.

Did not require sliding window strategy.

Abstract

Using deep learning models to recognize functional brain networks (FBNs) in functional magnetic resonance imaging (fMRI) has been attracting increasing interest recently. However, most existing work focuses on detecting static FBNs from entire fMRI signals, such as correlation-based functional connectivity. Sliding-window is a widely used strategy to capture the dynamics of FBNs, but it is still limited in representing intrinsic functional interactive dynamics at each time step. And the number of FBNs usually need to be set manually. More over, due to the complexity of dynamic interactions in brain, traditional linear and shallow models are insufficient in identifying complex and spatially overlapped FBNs across each time step. In this paper, we propose a novel Spatial and Channel-wise Attention Autoencoder (SCAAE) for discovering FBNs dynamically. The core idea of SCAAE is to apply attention mechanism to FBNs construction. Specifically, we designed two attention modules: 1) spatial-wise attention (SA) module to discover FBNs in the spatial domain and 2) a channel-wise attention (CA) module to weigh the channels for selecting the FBNs automatically. We evaluated our approach on ADHD200 dataset and our results indicate that the proposed SCAAE method can effectively recover the dynamic changes of the FBNs at each fMRI time step, without using sliding windows. More importantly, our proposed hybrid attention modules (SA and CA) do not enforce assumptions of linearity and independence as previous methods, and thus provide a novel approach to better understanding dynamic functional brain networks.