What to learn from a few visible transitions' statistics?

TL;DR

This paper develops a framework to infer thermodynamic and dynamical properties of Markov systems from partial transition data, including entropy production and irreversibility, validated on biophysical molecular motor models.

Contribution

It introduces analytical expressions for transition probabilities and a lower bound on entropy production based solely on transition statistics, applicable even with limited data.

Findings

Entropy production can be estimated from transition statistics.

Irreversibility detection is possible without net currents.

Transition statistics reveal underlying disorder in molecular motor motion.

Abstract

Interpreting partial information collected from systems subject to noise is a key problem across scientific disciplines. Theoretical frameworks often focus on the dynamics of variables that result from coarse-graining the internal states of a physical system. However, most experimental apparatuses can only detect a partial set of transitions, while internal states are inaccessible. Here, we consider an observer who records a time series of occurrences of one or several transitions performed by a system, under the assumption that its underlying dynamics is Markovian. We pose the question of how one can use the transitions' information to make inferences of dynamical, thermodynamical, and biochemical properties. First, elaborating on first-passage time techniques, we derive analytical expressions for the probabilities of consecutive transitions and the time elapsed between them. Second, we derive a lower bound for the entropy production rate that equals the sum of two non-negative contributions, one due to the statistics of transitions and a second due to the statistics of inter-transition times. We also show that when only one current is measured, our estimate still detects irreversibility even in the absence of net currents. We illustrate the developed framework in experimentally-validated biophysical models of kinesin and dynein molecular motors, and in a minimal model for template-directed polymerization. Our results reveal that while entropy production is entailed in the statistics of two successive transitions of the same type, the statistics of two different successive transitions can probe the existence of an underlying disorder in the motion of a molecular motor. Taken all together, our results highlight the power of inference from transition statistics ranging from thermodynamic quantities to network-topology properties of Markov processes.