TL;DR
HTSeq 2.0 is an enhanced Python library for high-throughput sequencing data analysis, featuring a new API, support for single cell omics, and improved usability, documentation, and Python 3 compatibility.
Contribution
The paper introduces HTSeq 2.0 with a comprehensive API update, new features for single cell data, and improved software quality and support.
Findings
New sparse data representation for genomic data
Enhanced htseq-count for single cell omics
Open-source release with improved documentation
Abstract
Summary: HTSeq 2.0 provides a more extensive API including a new representation for sparse genomic data, enhancements in htseq-count to suit single cell omics, a new script for data using cell and molecular barcodes, improved documentation, testing and deployment, bug fixes, and Python 3 support. Availability and implementation: HTSeq 2.0 is released as an open-source software under the GNU General Public Licence and available from the Python Package Index at https://pypi.python.org/pypi/HTSeq. The source code is available on Github at https://github.com/htseq/htseq. Contact: [email protected]
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