TorchEsegeta: Framework for Interpretability and Explainability of Image-based Deep Learning Models

TL;DR

This paper introduces TorchEsegeta, a comprehensive framework that enhances the interpretability and explainability of deep learning models in medical imaging, especially for segmentation tasks, to increase clinician trust.

Contribution

The paper presents TorchEsegeta, a unified framework extending interpretability techniques to 3D segmentation models, with quantitative comparison tools for visual explanations in medical imaging.

Findings

Framework effectively visualizes influential anatomical regions.

Quantitative metrics compare explanation quality.

Applied successfully to brain vessel segmentation.

Abstract

Clinicians are often very sceptical about applying automatic image processing approaches, especially deep learning based methods, in practice. One main reason for this is the black-box nature of these approaches and the inherent problem of missing insights of the automatically derived decisions. In order to increase trust in these methods, this paper presents approaches that help to interpret and explain the results of deep learning algorithms by depicting the anatomical areas which influence the decision of the algorithm most. Moreover, this research presents a unified framework, TorchEsegeta, for applying various interpretability and explainability techniques for deep learning models and generate visual interpretations and explanations for clinicians to corroborate their clinical findings. In addition, this will aid in gaining confidence in such methods. The framework builds on existing interpretability and explainability techniques that are currently focusing on classification models, extending them to segmentation tasks. In addition, these methods have been adapted to 3D models for volumetric analysis. The proposed framework provides methods to quantitatively compare visual explanations using infidelity and sensitivity metrics. This framework can be used by data scientists to perform post-hoc interpretations and explanations of their models, develop more explainable tools and present the findings to clinicians to increase their faith in such models. The proposed framework was evaluated based on a use case scenario of vessel segmentation models trained on Time-of-fight (TOF) Magnetic Resonance Angiogram (MRA) images of the human brain. Quantitative and qualitative results of a comparative study of different models and interpretability methods are presented. Furthermore, this paper provides an extensive overview of several existing interpretability and explainability methods.