Assembly of Model Postsynaptic Densities Involves Interactions Auxiliary to Stoichiometric Binding

TL;DR

This study develops a mean-field theory to understand protein phase separation in neuronal postsynaptic densities, revealing auxiliary interactions beyond known stoichiometric complexes are crucial for condensate formation.

Contribution

The paper introduces a theoretical framework that incorporates auxiliary interactions to better explain phase separation in neuronal proteins, aligning with experimental observations.

Findings

Auxiliary interactions are essential for accurate phase diagram predictions.

The 3:2 stoichiometry alone cannot explain the observed phase behavior.

Higher-order or weaker interactions likely drive condensate formation.

Abstract

The assembly of functional biomolecular condensates often involves liquid-liquid phase separation (LLPS) of proteins with multiple modular domains, which can be folded or conformationally disordered to various degrees. To understand the LLPS-driving domain-domain interactions, a fundamental question is how readily the interactions in the condensed phase can be inferred from inter-domain interactions in dilute solutions. In particular, are the interactions leading to LLPS exclusively those underlying the formation of discrete inter-domain complexes in homogeneous solutions? We address this question by developing a mean-field LLPS theory of two stoichiometrically constrained solute species. The theory is applied to the neuronal proteins SynGAP and PSD-95, whose complex coacervate serves as a rudimentary model for neuronal postsynaptic densities (PSDs). The predicted phase behaviors are compared with experiments. Previously, a three-SynGAP, two-PSD-95 ratio was determined for SynGAP/PSD-95 complexes in dilute solutions. However, when this 3:2 stoichiometry is uniformly imposed in our theory encompassing both dilute and condensed phases, the tie-line pattern of the predicted SynGAP/PSD-95 phase diagram differs drastically from that obtained experimentally. In contrast, theories embodying alternate scenarios postulating auxiliary SynGAP-PSD-95 as well as SynGAP-SynGAP and PSD-95-PSD-95 interactions in addition to those responsible for stoichiometric SynGAP/PSD-95 complexes produce tie-line patterns consistent with experiment. Hence, our combined theoretical-experimental analysis indicates that weaker interactions or higher-order complexes beyond the 3:2 stoichiometry, but not yet documented, are involved in the formation of SynGAP/PSD-95 condensates, imploring future efforts to ascertain the nature of these auxiliary interactions in PSD-like LLPS.