Team NeuroPoly: Description of the Pipelines for the MICCAI 2021 MS New Lesions Segmentation Challenge

TL;DR

This paper details the pipelines developed for the MICCAI 2021 MS Lesion Segmentation Challenge, including data preprocessing, architecture, and hyperparameters, with publicly available code.

Contribution

It provides a comprehensive description of the segmentation pipelines used in the challenge, highlighting specific preprocessing and model configurations.

Findings

Effective segmentation pipeline described

Open-source code available for reproducibility

Framework can be adapted for similar tasks

Abstract

This paper gives a detailed description of the pipelines used for the 2nd edition of the MICCAI 2021 Challenge on Multiple Sclerosis Lesion Segmentation. An overview of the data preprocessing steps applied is provided along with a brief description of the pipelines used, in terms of the architecture and the hyperparameters. Our code for this work can be found at: https://github.com/ivadomed/ms-challenge-2021.