Optimized protocol for DNA extraction from ancient skeletal remains using Chelex-100

TL;DR

This paper presents an optimized Chelex-100 protocol for extracting DNA from ancient skeletal remains, significantly improving amplification success despite challenging soil-influenced inhibitors and limited DNA preservation.

Contribution

The study introduces a novel optimized DNA extraction protocol using Chelex-100 specifically tailored for ancient skeletal remains, enhancing DNA yield and quality for PCR analysis.

Findings

Improved PCR amplification success with the new protocol.

Effective extraction from samples with high inhibitor content.

Significant enhancement over previous methods.

Abstract

PCR-based analysis of skeletonized human remains is a common aspect in both forensic human identification as well as Ancient DNA research. In this, both areas not merely utilize very similar methodology, but also share the same problems regarding quantity and quality of recovered DNA and presence of inhibitory substances in samples from excavated remains. To enable amplification based analysis of the remains, development of optimized DNA extraction procedures is thus a critical factor in both areas. The study here presents an optimized protocol for DNA extraction from ancient skeletonized remains using Chelex-100, which proved to be effective in yielding amplifiable extracts from sample material excavated after centuries in a soil environment, which consequently have high inhibitor content and overall limited DNA preservation. Success of the optimization strategies utilized is shown in significantly improved amplification outcomes compared to the predecessor method.