Modeling time evolving COVID-19 uncertainties with density dependent asymptomatic infections and social reinforcement

TL;DR

This paper introduces the SUDR model, a novel hybrid approach that captures COVID-19 transmission uncertainties, including undocumented infections and social reinforcement, using Bayesian inference and density-dependent modeling.

Contribution

The SUDR model uniquely distinguishes undocumented and documented infections and incorporates Bayesian inference to quantify uncertainties in COVID-19 transmission dynamics.

Findings

SUDR outperforms classic SIR models in capturing uncertainties.

It effectively models undocumented infections during unknown transmission processes.

The approach provides deeper quantitative insights into COVID-19 uncertainties.

Abstract

The COVID-19 pandemic has posed significant challenges in modeling its complex epidemic transmissions, infection and contagion, which are very different from known epidemics. The challenges in quantifying COVID-19 complexities include effectively modeling its process and data uncertainties. The uncertainties are embedded in implicit and high-proportional undocumented infections, asymptomatic contagion, social reinforcement of infections, and various quality issues in the reported data. These uncertainties become even more apparent in the first two months of the COVID-19 pandemic, when the relevant knowledge, case reporting and testing were all limited. Here we introduce a novel hybrid approach Susceptible-Undocumented infected-Documented infected-Recovered (SUDR) model. First, SUDR (1) characterizes and distinguishes Undocumented (U) and Documented (D) infections commonly seen during COVID-19 incubation periods and asymptomatic infections. Second, SUDR characterizes the probabilistic density of infections by capturing exogenous processes. Lastly, SUDR approximates the density likelihood of COVID-19 prevalence over time by incorporating Bayesian inference into SUDR. Different from existing COVID-19 models, SUDR characterizes the undocumented infections during unknown transmission processes. To capture the uncertainties of temporal transmission and social reinforcement during COVID-19 contagion, the transmission rate is modeled by a time-varying density function of undocumented infectious cases. By sampling from the mean-field posterior distribution with reasonable priors, SUDR handles the randomness, noise and sparsity of COVID-19 observations widely seen in the public COVID-19 case data. The results demonstrate a deeper quantitative understanding of the above uncertainties, in comparison with classic SIR, time-dependent SIR, and probabilistic SIR models.